CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99044	Soybean	mitochondrion	89.59	84.29
KRH14557	Soybean	mitochondrion	39.17	73.37
Zm00001d008884_P001	Maize	cytosol	19.83	69.77
KRH73571	Soybean	nucleus	64.46	65.55
CDY46330	Canola	nucleus	31.07	64.38
Zm00001d030797_P001	Maize	mitochondrion	21.65	62.98
CDY46329	Canola	mitochondrion	55.87	61.57
CDY37406	Canola	mitochondrion	51.41	60.98
Bra023836.1-P	Field mustard	mitochondrion	60.0	58.83
Bra031349.1-P	Field mustard	mitochondrion	58.35	58.64
CDY10634	Canola	mitochondrion	58.35	58.64
AT3G22330.1	Thale cress	mitochondrion	59.67	58.6
CDY37408	Canola	mitochondrion	58.02	58.4
Zm00001d048578_P001	Maize	cytosol	22.31	57.69
AT3G22310.1	Thale cress	mitochondrion	57.85	57.38
Os07t0143700-01	Rice	plastid	30.74	56.53
PGSC0003DMT400074131	Potato	plastid	46.45	56.43
VIT_12s0142g00670.t01	Wine grape	plastid	60.33	54.8
HORVU2Hr1G060640.15	Barley	cytosol	48.26	54.68
EER97966	Sorghum	mitochondrion	54.21	54.49
EES17375	Sorghum	mitochondrion	55.54	54.37
Zm00001d041480_P001	Maize	mitochondrion	53.72	54.26
Solyc07g044760.2.1	Tomato	plastid	56.2	53.97
KRH14556	Soybean	cytosol	25.45	53.66
Zm00001d031050_P002	Maize	mitochondrion	53.72	53.19
TraesCS5B01G052100.1	Wheat	mitochondrion	52.4	53.1
TraesCS5D01G057800.1	Wheat	mitochondrion	52.73	53.08
TraesCS2B01G273300.1	Wheat	plastid	54.05	52.83
Zm00001d018787_P001	Maize	mitochondrion	53.06	52.71
TraesCS2A01G253700.1	Wheat	mitochondrion	53.88	52.67
Os12t0611200-01	Rice	nucleus	54.38	52.39
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.63	52.12
TraesCS5A01G047300.2	Wheat	mitochondrion	53.06	52.11
TraesCS2D01G254200.1	Wheat	mitochondrion	53.22	52.02
HORVU5Hr1G011460.3	Barley	mitochondrion	52.73	51.04
Solyc12g006320.1.1	Tomato	plastid	52.23	49.14
GSMUA_Achr2P13080_001	Banana	plastid	57.36	47.02
KRH33703	Soybean	plastid	42.98	35.33
KRG90413	Soybean	plastid	42.81	35.19
KRH68372	Soybean	nucleus	43.97	34.5
KRG96641	Soybean	nucleus	43.64	34.24
GSMUA_Achr2P13070_001	Banana	cytosol	58.02	29.7
KRH35418	Soybean	endoplasmic reticulum	31.24	27.12
KRG91400	Soybean	nucleus	30.91	26.98
KRH15837	Soybean	nucleus	8.1	26.2
KRH42587	Soybean	nucleus	12.4	24.43
KRH15843	Soybean	cytosol	14.38	22.96
KRH15846	Soybean	nucleus	19.01	20.61
KRH44787	Soybean	nucleus	19.5	19.12

Protein Annotations

EntrezGene:100815635	MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EMBL:ACUP02005298	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G303000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KXV6	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH45952	ProteinID:KRH45952	ProteinID:KRH45952.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002338985	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:42113328..42120766

Molecular Weight (calculated)

64849.9 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.328

Length

605 amino acids

Sequence
(BLAST)

001: MTSSVILRRS SSVISRRFFA ALASVEPLPR RFPADRYGVS GDGSRTIHTN PGPLNFRASA VPRAAQFAVE RDYSNYEEVS GANSDEGLEI ANLGIAPQIV
101: DALAKKGIAK LFPIQRAVLE PAMQGRDMIG RARTGTGKTL AFGIPILDSI IQFNAKHGQG RHPLALVLAP TRELARQVEK EFNEAAPNLA MICLYGGMPI
201: QQQMRQLNYG VDIAVGTPGR IIDLLNRGAL NLKNVKFVVL DEADQMLQVG FQEAVEKILE GLSPNRQTLM FSATMPSWIK NITRNYLNNP LTIDLVGDSD
301: QKLADGISLY SIVSDSYTKA GILAPLITEH ANGGKCIVFT QTKRDADRLS YVMAKSLRCE ALHGDISQTQ REKTLAGFRN NNFNVLVATD VASRGLDIPN
401: VDLVIHYDLP NSSEIFVHRS GRTGRAGKKG SAILVYTQGQ SRAVQTIQRD VGCKFTELPK IDAPAGSAEM FTGMGGGRSG SMRDRQSGGT GFGRNPGLGR
501: SGSYGNSGFG RSSYGNSSEM NRYDGGFGSG QAGTRFGGKS RPSGFGGFGS SNQSGSFRNF GSGQSGAYGD RMSSQSSTFG NLHGGGFGAF GNNPNVDSYN
601: RGKAF

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.