CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15837	Soybean	nucleus	49.19	80.75
KRH15843	Soybean	cytosol	68.4	55.41
TraesCS3A01G243600.1	Wheat	cytosol	36.81	51.83
KRH15846	Soybean	nucleus	85.99	47.31
KRH44787	Soybean	nucleus	87.62	43.6
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	18.89	38.93
VIT_10s0003g04000.t01	Wine grape	nucleus	61.56	36.63
PGSC0003DMT400059139	Potato	cytosol	57.65	34.5
Solyc07g005890.2.1	Tomato	nucleus	57.65	34.5
CDY44172	Canola	cytosol	58.31	33.71
AT4G15850.1	Thale cress	nucleus	57.0	33.52
GSMUA_Achr10P...	Banana	cytosol	55.37	33.2
Bra033519.1-P	Field mustard	cytosol	57.33	33.15
CDY22890	Canola	cytosol	57.33	33.15
Os02t0795900-01	Rice	nucleus	54.07	31.86
TraesCS6A01G358500.1	Wheat	nucleus	53.75	31.37
TraesCS6D01G341300.1	Wheat	nucleus	53.75	31.37
EES07679	Sorghum	nucleus	52.77	31.21
TraesCS6B01G391200.1	Wheat	nucleus	53.42	31.18
Zm00001d018375_P001	Maize	nucleus	53.09	31.17
HORVU6Hr1G085490.2	Barley	mitochondrion	53.75	28.75
Zm00001d052036_P001	Maize	plastid	18.57	27.14
TraesCS3D01G247800.1	Wheat	nucleus	36.48	24.4
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	57.98	23.18
KRH14557	Soybean	mitochondrion	19.87	18.89
KRH73571	Soybean	nucleus	24.43	12.61
KRH45952	Soybean	mitochondrion	24.43	12.4
KRG99044	Soybean	mitochondrion	24.43	11.66
KRG91400	Soybean	nucleus	23.45	10.39
KRH33703	Soybean	plastid	24.76	10.33
KRG90413	Soybean	plastid	24.76	10.33
KRH35418	Soybean	endoplasmic reticulum	22.8	10.04
KRG96641	Soybean	nucleus	25.08	9.99
KRH68372	Soybean	nucleus	24.76	9.86
KRH14556	Soybean	cytosol	4.56	4.88

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0IRG3	EMBL:ACUP02004817	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G099300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	EnsemblPlants:KRH42587	ProteinID:KRH42587
ProteinID:KRH42587.1	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0006ED7933	:

Description

hypothetical protein

Coordinates

chr8:-:7593373..7595297

Molecular Weight (calculated)

34673.6 Da

IEP (calculated)

9.076

GRAVY (calculated)

-0.041

Length

307 amino acids

Sequence
(BLAST)

001: MEQPSVAILP WMHHPVDITR CQELPVCSVP LMERRLQSVL EENMGISKLF SVQVALWQET VGSDDFERDL CINSPTESGK TLAYALPIVQ NLSTNTSDRL
101: FALVVVPTRD LALQVKRVFD ALASSLGLHI GLAAGQSSLR HELSSLIYLP GEDDGPDPGF LSPLWFQSKV NILVATPGRL MDHVNKLSLK HLRYLVVDEA
201: DRLLREDYQS WLPTVLKLTQ FRLAKIICER KVKPLYLVTL LKSLGKEKCI VFTRSVESTH HLCKLLNCFG DLKIGIKEFS GLKHQLSKFC YPKFNSPKTK
301: NLVKPKR

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.