Factsheet for TraesCS6D01G341300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G358500.1	Wheat	nucleus	98.86	98.86
TraesCS6B01G391200.1	Wheat	nucleus	98.29	98.29
TraesCS3D01G247800.1	Wheat	nucleus	78.71	90.2
HORVU6Hr1G085490.2	Barley	mitochondrion	96.58	88.5
Os02t0795900-01	Rice	nucleus	83.08	83.88
EES07679	Sorghum	nucleus	81.94	83.04
GSMUA_Achr10P...	Banana	cytosol	63.12	64.84
Solyc07g005890.2.1	Tomato	nucleus	59.89	61.4
PGSC0003DMT400059139	Potato	cytosol	59.7	61.21
VIT_10s0003g04000.t01	Wine grape	nucleus	59.89	61.05
AT4G15850.1	Thale cress	nucleus	54.56	54.98
CDY44172	Canola	cytosol	54.94	54.43
Bra033519.1-P	Field mustard	cytosol	54.75	54.24
CDY22890	Canola	cytosol	54.75	54.24
KRH42587	Soybean	nucleus	31.37	53.75
KRH15843	Soybean	cytosol	37.64	52.24
KRH15837	Soybean	nucleus	18.25	51.34
Zm00001d052036_P001	Maize	plastid	17.3	43.33
KRH15846	Soybean	nucleus	44.3	41.76
KRH44787	Soybean	nucleus	47.91	40.84
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	54.94	37.63
TraesCS5D01G057800.1	Wheat	mitochondrion	21.1	18.47
TraesCS2D01G254200.1	Wheat	mitochondrion	20.53	17.45
TraesCS5D01G505700.2	Wheat	plastid	23.38	15.95
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	21.1	15.86

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6D01G341300	EnsemblPlants:TraesCS6D01G341300.1
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:440367707..440371816

Molecular Weight (calculated)

59247.1 Da

IEP (calculated)

9.777

GRAVY (calculated)

-0.332

Length

526 amino acids

Sequence
(BLAST)

001: MVSMKTKGQE DEAPEERVPH LPWMRHPVDI DSFSGCPVTS LPRLDPRLAE VVQRMGIESF FPVQVSTWLE TIGPGAFQRD ICINSPTGSG KTLAYALPIV
101: QMLSTRKVRC LRALVVLPTR DLALQVKEVF DAIAPVVGLT VASAVGQSSI ADEISDLIKK SKQELYPSLD DEYVEMEPQT KVDILVATPG RLMDHINMTK
201: GFSLEHLQYL VVDETDRMLR EAYQSWLPTV IQFTRPTNQN HFRHDTPGRT LLHPLTTIRR SGVERGFKGK CYPRLAKIVC SATLTQDPSK LSQLELHHPL
301: LLNSGKKRYR IPTKLESYKL ICTSNIKPLC LIVLLQELRG EKCLVFTKSV DDSHRLSTLL GFFEDLPFKF SEFSSLQRES TRRKTLAAFK EGKIDVLIGS
401: DIMARGIHID GLRYVINYEM PQYVKTYIHR AGRTARAGES GSCFTFLRKN EVKRFDKMLK KADGSSCILR SLPEESIDSL RPVFETALEK LKDKLKGSAE
501: PEASKKSNKS GDKAPGALKR KRGKQT

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.