Factsheet for TraesCS5D01G057800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G052100.1	Wheat	mitochondrion	94.84	95.48
TraesCS5A01G047300.2	Wheat	mitochondrion	97.5	95.13
HORVU5Hr1G011460.3	Barley	mitochondrion	91.35	87.84
EES17375	Sorghum	mitochondrion	74.88	72.82
Zm00001d031050_P002	Maize	mitochondrion	73.88	72.67
Zm00001d041480_P001	Maize	mitochondrion	71.88	72.12
Os12t0611200-01	Rice	nucleus	74.88	71.66
KRH14557	Soybean	mitochondrion	31.95	59.44
PGSC0003DMT400074131	Potato	plastid	47.59	57.43
CDY37406	Canola	mitochondrion	47.42	55.88
KRH73571	Soybean	nucleus	54.74	55.29
CDY46329	Canola	mitochondrion	49.58	54.28
CDY46330	Canola	nucleus	26.29	54.11
TraesCS2D01G254200.1	Wheat	mitochondrion	55.24	53.63
GSMUA_Achr7P00980_001	Banana	mitochondrion	45.59	52.9
KRH45952	Soybean	mitochondrion	53.08	52.73
Solyc07g044760.2.1	Tomato	plastid	54.91	52.38
Bra023836.1-P	Field mustard	mitochondrion	53.58	52.19
AT3G22330.1	Thale cress	mitochondrion	52.75	51.46
Bra031349.1-P	Field mustard	mitochondrion	51.41	51.33
CDY37408	Canola	mitochondrion	51.25	51.25
CDY10634	Canola	mitochondrion	51.25	51.16
VIT_12s0142g00670.t01	Wine grape	plastid	56.57	51.05
KRG99044	Soybean	mitochondrion	53.74	50.23
AT3G22310.1	Thale cress	mitochondrion	50.58	49.84
KRH14556	Soybean	cytosol	23.79	49.83
Solyc12g006320.1.1	Tomato	plastid	52.58	49.14
GSMUA_Achr2P13080_001	Banana	plastid	59.07	48.1
TraesCS5D01G505700.2	Wheat	plastid	43.59	33.98
GSMUA_Achr2P13070_001	Banana	cytosol	59.57	30.29
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	32.28	27.71
TraesCS6D01G341300.1	Wheat	nucleus	18.47	21.1
TraesCS3D01G247800.1	Wheat	nucleus	15.14	19.83

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF296	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5D01G057800	EnsemblPlants:TraesCS5D01G057800.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr5D:+:54680380..54683861

Molecular Weight (calculated)

62457.4 Da

IEP (calculated)

10.142

GRAVY (calculated)

-0.254

Length

601 amino acids

Sequence
(BLAST)

001: MYAMIRRADP LRRRAASAIL AALLQHPAGP SAAGASASAL PLRSPLPPPA MWFHSKPAPL GFRETGAARA GAHAQFAADE GWNYEDKRKP AGGVAGAGAG
101: AGAKEEGLEI AKLGISSEIV DKLSAKGITK LFPIQRAVLE PAMQGKDMVG RAKTGTGKTL AFGIPIMDAI IRHNAANKPG IHPLAICLAP TRELAKQVEK
201: EFVDSSRLDT LCVYGGTPIQ QQMRVLSQGV DVVVGTPGRV IDLLNRRALN LSNVQFVVLD EADQMLSVGF DEAVETILQN VPAKRQTLMF SATMPPWIRK
301: LMQKYLKDPV IVDLVGEDDQ KLAEGISLLS IATENHAKPA VLGQLIQDHA KGGKCIVFTQ TKRDADRLSY TMGRSVQCQA LHGDITQQQR ERTLQGFREG
401: RFNTLIATDV AARGLDIPNV DLVIHYELPN NSEIFVHRSG RTGRAGKKGT AIVMYSYNQS RAVRGIENDV GGKFKELPKI NVEGSDLTMA SGYDSFGGGG
501: GGGRSRGGGF GGRDSGFGRS GGGFGRSGGG GGFGDSGFGR SGGGGGFGDS GFGRSGGGGG GFGSSGGFGD SGSGRSGGFG GGSGSSGSSW GGFGSFGGKS
601: S

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.