Factsheet for TraesCS5D01G505700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G367700.1	Wheat	nucleus	98.7	99.48
TraesCS5B01G504900.1	Wheat	plastid	96.89	92.91
Os03t0827700-01	Rice	nucleus	79.51	84.79
Zm00001d012922_P003	Maize	plastid	81.45	84.3
Zm00001d034721_P002	Maize	plastid	81.45	82.85
KXG37219	Sorghum	plastid	81.84	82.16
GSMUA_Achr2P01980_001	Banana	nucleus	66.02	73.13
VIT_14s0060g00060.t01	Wine grape	plastid	69.39	70.03
CDX80564	Canola	plastid	65.11	68.96
CDY05524	Canola	plastid	65.37	68.29
CDX87045	Canola	plastid	66.02	68.23
Bra020533.1-P	Field mustard	plastid	65.37	68.2
CDY66725	Canola	plastid	65.63	68.1
Bra009900.1-P	Field mustard	plastid	65.76	67.78
Bra036582.1-P	Field mustard	plastid	65.24	67.7
CDY61108	Canola	plastid	65.76	67.6
AT5G26742.2	Thale cress	plastid	65.37	67.38
GSMUA_Achr11P...	Banana	plastid	67.32	67.05
Solyc08g042050.2.1	Tomato	plastid	64.85	67.02
CDY19766	Canola	plastid	65.63	66.49
KRH68372	Soybean	nucleus	65.5	65.5
KRG96641	Soybean	nucleus	64.98	64.98
KRG90413	Soybean	plastid	61.87	64.81
KRH33703	Soybean	plastid	61.22	64.13
TraesCS2D01G254200.1	Wheat	mitochondrion	36.06	44.91
TraesCS5D01G057800.1	Wheat	mitochondrion	33.98	43.59
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	31.52	34.71
TraesCS6D01G341300.1	Wheat	nucleus	15.95	23.38
TraesCS3D01G247800.1	Wheat	nucleus	12.84	21.57

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	EnsemblPlantsGene:TraesCS5D01G505700	EnsemblPlants:TraesCS5D01G505700.2	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	TIGR:cd00079
TIGR:cd00268	TIGR:cd12938	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:531510846..531516963

Molecular Weight (calculated)

82310.0 Da

IEP (calculated)

7.140

GRAVY (calculated)

-0.343

Length

771 amino acids

Sequence
(BLAST)

001: MASLLTLPSL SLSSPSGGGT AGLAPALRLR AAFRCWALGR RWAGAAAAIA SPNSVLSEHA FKRLGLGGGS DDEDEEGYGS DQEGPAVEGL QQGDADELAI
101: SRLGLPAQLV ATLEKRGITH LFPIQRAVLI PALEGRDLIA RAKTGTGKTL AFGIPMIKQI IEQDEGRTPG RGRIPRALVL APTRELAKQV EKEIMESAPK
201: LSTVCVYGGV SYNTQQNALS RGVDVVVGTP GRLIDLINGG SLQLGEVRYL VLDEADQMLA VGFEEDVETI LQQLPAERQS MLFSATMPSW VKKLSRRYLD
301: NPLTIDLVGD QDEKLAEGIK LFAIPLTTTS KRTILSDLIT VYAKGGKTIV FTRTKRDADE VSLALTTSIA SEALHGDISQ HQRERTLNGF RQGKFTVLVA
401: TDVASRGLDI PNVDLIIHYE LPNDPETFVH RSGRTGRAGK AGNAILMFTT NQRRTVKSLE RDVGCKFEFI GPPTMEEVLD SSAEHVIATL RGVHPESIQY
501: FVPAAERLSQ ELGPTALASA LAHLSGFSQP PSSRSLISHE QGSVTLQLTR DPAYARGFFS PRSVTGFLSD VSPSAADAVG KIYLIADERV QGAVFDLPEE
601: IAKDLLTMEL PEGNTLSKVT KLPVLQDDGP ATDSYGRFSN SDRGSRNRRG SSRGGMGGGS RGRGSWDSDE GFRRGGRSSS RPDNDIWSDD DFSGGGARRS
701: NRSSSPGGGH SSYGGRGGSS SFGDRSSSFG ERSSSYGGRG GSSFGSRDRS FSGACFTCGQ SGHRASDCPN K

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.