Factsheet for Os03t0827700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
nucleus: 23303719
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012922_P003	Maize	plastid	87.83	85.23
Zm00001d034721_P002	Maize	plastid	88.24	84.17
KXG37219	Sorghum	plastid	87.69	82.55
TraesCS4A01G367700.1	Wheat	nucleus	84.51	79.87
TraesCS5D01G505700.2	Wheat	plastid	84.79	79.51
GSMUA_Achr2P01980_001	Banana	nucleus	72.2	75.0
TraesCS5B01G504900.1	Wheat	plastid	83.26	74.88
VIT_14s0060g00060.t01	Wine grape	plastid	74.55	70.55
CDX80564	Canola	plastid	68.88	68.41
GSMUA_Achr11P...	Banana	plastid	73.03	68.22
CDY05524	Canola	plastid	69.29	67.89
Bra020533.1-P	Field mustard	plastid	69.29	67.79
CDY66725	Canola	plastid	69.57	67.7
CDX87045	Canola	plastid	69.43	67.29
Bra009900.1-P	Field mustard	plastid	69.16	66.84
Bra036582.1-P	Field mustard	plastid	68.6	66.76
Solyc08g042050.2.1	Tomato	plastid	68.88	66.76
CDY61108	Canola	plastid	69.16	66.67
AT5G26742.2	Thale cress	plastid	68.6	66.31
KRG90413	Soybean	plastid	67.36	66.17
CDY19766	Canola	plastid	69.16	65.7
KRH33703	Soybean	plastid	66.67	65.49
KRH68372	Soybean	nucleus	69.71	65.37
KRG96641	Soybean	nucleus	69.57	65.24
Os07t0143700-01	Rice	plastid	20.89	45.9
Os12t0611200-01	Rice	nucleus	37.9	43.63
Os09t0520700-01	Rice	nucleus, plastid	34.16	35.49
Os02t0795900-01	Rice	nucleus	17.43	24.18

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009651	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0010501
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0042254	GO:GO:0046872	InterPro:GUCT
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os03g0827700	EnsemblPlants:Os03t0827700-01	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI0000E122B3	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

RNA helicase 3Similar to ATP-dependent RNA helicase. (Os03t0827700-01);Similar to cDNA clone:J013043E01, full insert sequence. (Os03t0827700-02)

Coordinates

chr3:+:34765940..34772282

Molecular Weight (calculated)

78436.1 Da

IEP (calculated)

6.607

GRAVY (calculated)

-0.446

Length

723 amino acids

Sequence
(BLAST)

001: RLRRRRGSRS GGRWAAAGAI ASPNSVLSEH AFKRLQLSDE EEEEEEGAYG SDEEGVEAVG GGEGDEDELA IARLGLPEQL VSTLEKRGIT HLFPIQRAVL
101: IPALDGRDLI ARAKTGTGKT LAFGIPMIKQ LMEEDDGRSV RRGRIPRVLV LAPTRELAKQ VEKEIKESAP KLSTVCVYGG VSYNVQQNAL SRGVDVVVGT
201: PGRIIDLING GSLQLGEVKY LVLDEADQML AVGFEEDVET ILQQLPAERQ SMLFSATMPG WVKKLSRRYL NNPLTIDLVG DQDEKLAEGI KLYAIPLTST
301: SKRTVLSDLI TVYAKGGKTI VFTKTKRDAD EVSLALTNSI ASEALHGDIS QHQRERTLNG FRQGKFTVLV ATDVAARGLD IPNVDLIIHY ELPNDPETFV
401: HRSGRTGRAG KAGTAILMFT NSQRRTVRSL ERDVGCRFDF ISPPAIEDVL ESSAEHVIAT LRGVHTESIQ YFIPAAERLQ EELGPNALAS ALAHLSGFSQ
501: PPSSRSLISH EQGWVTLQLT RDPGYGRGFF SPRSVTGFLS DVSSAAADEV GKIFLTADEK VQGAVFDLPE EIARDLLSME LPPGNTITKV TKLPALQDDG
601: PATDSYGRFS NSDRGFRNRR SRGGGSRGGR GGWDSDGEDR FRRGGRSFRS DNDSWSDDDF GGGRRSNRSS SFGGRGSSYG SRSSSSFGGR SSSFGSRDSS
701: RSFSGACFNC GESGHRASDC PNK

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.