Factsheet for GSMUA_Achr2P01980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	84.77	76.23
Os03t0827700-01	Rice	nucleus	75.0	72.2
VIT_14s0060g00060.t01	Wine grape	plastid	78.74	71.73
CDX80564	Canola	plastid	71.41	68.27
Zm00001d012922_P003	Maize	plastid	72.84	68.05
CDY05524	Canola	plastid	71.98	67.89
CDX87045	Canola	plastid	72.7	67.83
Bra020533.1-P	Field mustard	plastid	71.98	67.79
CDY66725	Canola	plastid	71.98	67.43
Zm00001d034721_P002	Maize	plastid	73.42	67.41
Bra036582.1-P	Field mustard	plastid	71.7	67.16
KXG37219	Sorghum	plastid	73.99	67.06
Solyc08g042050.2.1	Tomato	plastid	71.84	67.02
AT5G26742.2	Thale cress	plastid	71.98	66.98
KRG96641	Soybean	nucleus	73.99	66.8
TraesCS4A01G367700.1	Wheat	nucleus	73.28	66.67
Bra009900.1-P	Field mustard	plastid	71.55	66.58
KRH68372	Soybean	nucleus	73.71	66.54
KRH33703	Soybean	plastid	70.26	66.44
CDY61108	Canola	plastid	71.55	66.4
KRG90413	Soybean	plastid	70.11	66.3
CDY19766	Canola	plastid	72.27	66.1
TraesCS5D01G505700.2	Wheat	plastid	73.13	66.02
TraesCS5B01G504900.1	Wheat	plastid	71.55	61.94
GSMUA_Achr7P00980_001	Banana	mitochondrion	30.46	40.93
GSMUA_Achr7P05930_001	Banana	nucleus	34.34	39.37
GSMUA_Achr2P13080_001	Banana	plastid	39.22	36.99
GSMUA_Achr4P19590_001	Banana	nucleus	35.06	33.89
GSMUA_Achr10P...	Banana	cytosol	18.1	24.61
GSMUA_Achr2P13070_001	Banana	cytosol	40.23	23.69

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G01980_001	EnsemblPlants:GSMUA_Achr2P01980_001	EnsemblPlants:GSMUA_Achr2T01980_001	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0S4D9
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI00029529A8
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G01980_001]

Coordinates

chr2:+:7823988..7832301

Molecular Weight (calculated)

76370.8 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.538

Length

696 amino acids

Sequence
(BLAST)

001: MEGGGKRGGG EEEEYGSDAY NSEEEEEGSS SAAAGQDKDE LAITNLDLPQ QLVSSLEKRG ITHLFPIQRA VLLPALEGQD IIARAKTGTG KTLAFGIPII
101: KRLSEGDEGR RKSRQLGRLP RALVLAPTRE LARQVEKEIK ESAPYLSTVC VYGGVSYNIQ KNALSRGVDV VVGTPGRIID LINDNSLRLG EVQFLVLDEA
201: DQMLAVGFEE DVEVILEKLP SERQNMLFSA TMPGWVKKLA RRNLNDPLTI DLVGDQDEKL AEGIKLYAIP TTATSKRTIL SDLVTVYAKG GKAIVFTQTK
301: RDADEVSMAL TNSIASEALH GDISQHQRER TLNGFRQGKF TVLVATDVAA RGLDIPNVDL IIHYELPNDP ETFVHRSGRT GRAGKEGTAI LMFTSSQRRT
401: VKSLERDVGC RFEFISPPQM QEILESSAEQ VVATLQGVHP ESIEYFLPTA QRLTDEQGTQ ALAAALAHLS GFSRPPSSRS LINHEQGWVT LQLTREPGYS
501: RGFFSARSVT GFLSDVVPAA ADEVGKIYLI ADERIQGAVF DLPEDIAKEL LNKQLPPGNS ISKITKLPTL QDDGPSTDNY GRFSNRERGY RGGSSRDRNQ
601: RGFRSWGARD SNSDDGFRRG GRVSRTDSDD GFRRGGRVSR TDNSWSRSPR GSEDDWLIGG RRSSRSSSYG NRDRSFGGTC FNCGRSGHRA SECPNK

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.