CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012922_P003	Maize	plastid	91.41	94.23
Zm00001d034721_P002	Maize	plastid	92.32	93.54
Os03t0827700-01	Rice	nucleus	82.55	87.69
TraesCS4A01G367700.1	Wheat	nucleus	81.9	82.22
TraesCS5D01G505700.2	Wheat	plastid	82.16	81.84
TraesCS5B01G504900.1	Wheat	plastid	80.47	76.87
GSMUA_Achr2P01980_001	Banana	nucleus	67.06	73.99
VIT_14s0060g00060.t01	Wine grape	plastid	70.7	71.07
CDX80564	Canola	plastid	65.89	69.51
CDY05524	Canola	plastid	66.41	69.11
Bra020533.1-P	Field mustard	plastid	66.28	68.88
GSMUA_Achr11P...	Banana	plastid	69.4	68.86
CDX87045	Canola	plastid	66.8	68.77
CDY66725	Canola	plastid	66.41	68.64
Bra036582.1-P	Field mustard	plastid	65.89	68.1
Bra009900.1-P	Field mustard	plastid	66.28	68.05
CDY61108	Canola	plastid	66.28	67.87
AT5G26742.2	Thale cress	plastid	66.02	67.78
KRG96641	Soybean	nucleus	67.71	67.44
KRH68372	Soybean	nucleus	67.58	67.32
Solyc08g042050.2.1	Tomato	plastid	65.23	67.16
CDY19766	Canola	plastid	66.54	67.15
KRG90413	Soybean	plastid	64.19	66.98
KRH33703	Soybean	plastid	63.54	66.3
EER97966	Sorghum	mitochondrion	35.42	45.18
EES17375	Sorghum	mitochondrion	35.81	44.5
EER97062	Sorghum	nucleus	31.25	33.76
EES07679	Sorghum	nucleus	17.06	25.24
OQU76875	Sorghum	cytosol	0.65	10.87

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	UniProt:A0A1B6QH27	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0042254	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG37219	ProteinID:KXG37219	ProteinID:KXG37219.1
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G028100	SUPFAM:SSF52540	SUPFAM:SSF57756
SignalP:SignalP-noTM	UniParc:UPI0001C80BFF	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:2178733..2184967

Molecular Weight (calculated)

82956.5 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.403

Length

768 amino acids

Sequence
(BLAST)

001: MASLLTLPAL ALSNPATASD AVRLRSAAFR CWALRRRGWA AVAAVASPNS VLSEHAFKRL QLGSDDEDEE GTYGSDANEG FEAGEGFQGD EEELAIARLG
101: LPDELVATLE KRGITHLFPI QRAVLIPALE GRDLIARAKT GTGKTLAFGI PMIKQLIEQD NGQITRRGRT PRVLVLAPTR ELAKQVEKEI KESAPKLGTV
201: CVYGGVSYNV QQNALSRGVD VVVGTPGRII DLINGGSLQL GEVQYLVLDE ADQMLAVGFE EDVETILQQL PANRQSMLFS ATMPSWVKKL SRRYLNNPLT
301: IDLVGDQDEK LAEGIKLYAI PLTATSKRTI LSDLITVYAK GGKTIVFTRT KKDADEVSLA LTNSIASEAL HGDISQHQRE RTLNGFRQGK FTVLVATDVA
401: ARGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKAGTA ILMFTSSQKR TVKSLERDVG CKFEFISPPS MGEVLESSAE HVIATLRGVH PESTQYFLGA
501: AEKLTEELGP HALASALAHL SGFSQPPSSR SLISHEQGWV TLQLTREQGY GRGFFSPRSV TGFLSDVYSA AADEVGKIYL IADENVQGAV FDLPEEISKD
601: LLAMELPPGN TLMKISKLPA LQDDGPATDS YGRFSNDRGS RNRRSRGGGA ARGRGGWDTD GEDRSRGGGA ARGRGGWDTD SEDRFRRGGR SFRSDNDSWS
701: DDDWSSGGRK SNRSSSFGSR SSSYGSRGSP SFGGRSSSFG GRESNRSFSG ACFNCGESGH RASDCPNK

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.