CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036582.1-P	Field mustard	plastid	95.66	97.98
CDX87045	Canola	plastid	95.01	96.92
CDX80564	Canola	plastid	90.28	94.37
CDY05524	Canola	plastid	91.33	94.17
CDY66725	Canola	plastid	91.72	93.94
CDY61108	Canola	plastid	92.38	93.73
AT5G26742.2	Thale cress	plastid	89.36	90.91
VIT_14s0060g00060.t01	Wine grape	plastid	73.32	73.04
GSMUA_Achr2P01980_001	Banana	nucleus	66.1	72.27
KRG96641	Soybean	nucleus	71.88	70.95
KRH68372	Soybean	nucleus	70.96	70.04
KRH33703	Soybean	plastid	67.54	69.84
KRG90413	Soybean	plastid	67.54	69.84
Solyc08g042050.2.1	Tomato	plastid	68.07	69.44
Os03t0827700-01	Rice	nucleus	65.7	69.16
GSMUA_Achr11P...	Banana	plastid	69.91	68.73
Zm00001d012922_P003	Maize	plastid	66.49	67.92
Zm00001d034721_P002	Maize	plastid	66.49	66.75
KXG37219	Sorghum	plastid	67.15	66.54
TraesCS4A01G367700.1	Wheat	nucleus	66.36	66.01
TraesCS5D01G505700.2	Wheat	plastid	66.49	65.63
TraesCS5B01G504900.1	Wheat	plastid	65.05	61.57
CDY46330	Canola	nucleus	20.89	54.45
CDY37406	Canola	mitochondrion	32.19	48.04
CDY46329	Canola	mitochondrion	34.17	47.36
CDY37408	Canola	mitochondrion	34.82	44.09
CDY10634	Canola	mitochondrion	34.82	44.02
CDY28363	Canola	plastid	13.27	36.86
CDY16789	Canola	nucleus	30.09	36.06
CDX87236	Canola	nucleus	29.57	35.32
CDY44172	Canola	cytosol	18.53	26.55
CDY22890	Canola	cytosol	18.27	26.18
CDY34116	Canola	cytosol	13.14	19.61
CDY44622	Canola	cytosol	14.19	12.5

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	GO:A0A078G351	UniProt:A0A078G351
EnsemblPlants:CDY19766	ProteinID:CDY19766	ProteinID:CDY19766.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00009513001	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI0004EE56DC	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

BnaA09g04190DBnaA09g04190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G351]

Coordinates

chrLK032100:+:279389..283799

Molecular Weight (calculated)

82445.7 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.321

Length

761 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLETSK PTSKKRSTSL SLSLDNPFFS SPLSLRRTRL IHSSLLPPSA VATPNSVLSE EAFKSLGLSD EFDLEVSSED DGEELAISKL
101: RLPQRLGESL EKRGITHLFP IQRAVLVPAL EGRDIIARAK TGTGKTLAFG IPIIKRLTEQ SWNYSAFRKS GRLPKFLVLA PTRELAKQVE KEIKESAPYL
201: STVCVYGGVS YTIQQSALSR GVDVVVGTPG RIIDLIEGRS LKLGEVEYLV LDEADQMLAV GFEEAVESIL ENLPQKRQSM LFSATMPTWV KKLARKYLDN
301: PLNIDLVGDQ DEKLAEGIKL YAISATSTSK RTILSDLITF AISLNMVDYC LVSFRLAGSV YAKGGKTIVF TQTKRDADEV SLALSNSIAS EALHGDISQH
401: QRERTLNGFR QGKFTVLVAT DVASRGLDIP NVDLVIHYEL PNDPETFVHR SGRTGRAGKE GSAILMHSSS QKRTVRSLER DVGCRFEFIS PPTVGDLLEA
501: SADQLVATLN GVHPESIKFF SATAQKLFEE KGTDALAAAL AHLSGFSQPP SSRSLLSHEQ GWVTLQLIRD PTNSRGFLSA RSVTGFLSDV YRPAADEVGK
601: IFMIADERVQ GAVFDLPEDI AKELLEKEVP EGNSLSMITK LPPLQDDGPS SDNYGRFSSR DRMPRGGGGS RGSRFGGRGG SSRGRDDDRR SRSSGGGGSS
701: WSRGGGGSRG SSDDWLIGGG SERRSSSSSR GPSRERSFGG ACFTCGSSGH RAADCPDKRG F

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.