CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023836.1-P	Field mustard	mitochondrion	98.0	87.2
CDY46330	Canola	nucleus	45.54	85.62
CDY37406	Canola	mitochondrion	74.5	80.2
AT3G22330.1	Thale cress	mitochondrion	86.89	77.44
CDY10634	Canola	mitochondrion	83.79	76.41
Zm00001d008884_P001	Maize	cytosol	23.86	76.16
CDY37408	Canola	mitochondrion	83.24	76.04
Zm00001d030797_P001	Maize	mitochondrion	26.05	68.75
Zm00001d048578_P001	Maize	cytosol	26.41	61.97
PGSC0003DMT400074131	Potato	plastid	53.55	59.04
KRH73571	Soybean	nucleus	63.57	58.66
Os07t0143700-01	Rice	plastid	34.79	58.05
KRH45952	Soybean	mitochondrion	61.57	55.87
GSMUA_Achr7P00980_001	Banana	mitochondrion	51.18	54.25
KRG99044	Soybean	mitochondrion	62.66	53.5
VIT_12s0142g00670.t01	Wine grape	plastid	64.66	53.3
EER97966	Sorghum	mitochondrion	58.11	52.99
HORVU2Hr1G060640.15	Barley	cytosol	51.18	52.62
Solyc07g044760.2.1	Tomato	plastid	59.93	52.22
Zm00001d018787_P001	Maize	mitochondrion	56.83	51.23
TraesCS2A01G253700.1	Wheat	mitochondrion	57.01	50.57
Zm00001d041480_P001	Maize	mitochondrion	55.01	50.42
TraesCS2B01G273300.1	Wheat	plastid	56.83	50.4
TraesCS5B01G052100.1	Wheat	mitochondrion	54.64	50.25
TraesCS2D01G254200.1	Wheat	mitochondrion	56.65	50.24
EES17375	Sorghum	mitochondrion	56.47	50.16
Zm00001d031050_P002	Maize	mitochondrion	55.37	49.75
TraesCS5D01G057800.1	Wheat	mitochondrion	54.28	49.58
Solyc12g006320.1.1	Tomato	plastid	57.38	48.99
TraesCS5A01G047300.2	Wheat	mitochondrion	54.83	48.86
HORVU5Hr1G011460.3	Barley	mitochondrion	55.37	48.64
Os12t0611200-01	Rice	nucleus	54.28	47.45
GSMUA_Achr2P13080_001	Banana	plastid	61.2	45.53
CDY66725	Canola	plastid	47.91	35.4
CDX80564	Canola	plastid	46.81	35.3
CDY05524	Canola	plastid	47.36	35.23
CDX87045	Canola	plastid	47.36	34.85
CDY28363	Canola	plastid	17.3	34.67
CDY61108	Canola	plastid	47.36	34.67
CDY19766	Canola	plastid	47.36	34.17
GSMUA_Achr2P13070_001	Banana	cytosol	63.02	29.27
CDX87236	Canola	nucleus	32.97	28.41
CDY16789	Canola	nucleus	32.79	28.35
CDY44172	Canola	cytosol	21.13	21.85
CDY22890	Canola	cytosol	20.95	21.66
CDY34116	Canola	cytosol	14.21	15.29
CDY44622	Canola	cytosol	14.94	9.49

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	GO:A0A078IAJ1	UniProt:A0A078IAJ1	EnsemblPlants:CDY46329	ProteinID:CDY46329
ProteinID:CDY46329.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0030312
EnsemblPlantsGene:GSBRNA2T00083738001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EE5C20	SEG:seg	:	:	:	:

Description

BnaC01g31630DBnaC01g31630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAJ1]

Coordinates

chrLK032661:-:149577..152363

Molecular Weight (calculated)

59147.4 Da

IEP (calculated)

9.384

GRAVY (calculated)

-0.262

Length

549 amino acids

Sequence
(BLAST)

001: MIATVLRRSC LDASRRTLSA SLTSINAALF HHFTPSAAAK VSDLAPTGKP SFALGNQFGV KSREFHFQSG PSEFRSTVVS PAGFAISETS DRAIADSESS
101: GDGLAIAELG ISPEIVKALS AKGIEKLFPI QKAVLEPAMQ GRDMIGRART GTGKTLAFGI PIIDKIIKFN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICV YGGTPIGQQM RQLDYGVDVA VGTPGRIIDL IKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILERLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNDPLTID LVGDSDQKLA DGITTYSIMA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYGLA RTFKCEPLHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLV IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGGSIYEGIG GRSGESFGGG
501: MRDRNDYGSS GGRSNRSSGF GGFGSDRSSQ SGGRSSFGGF GSNDGKRSY

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.