Factsheet for GSMUA_Achr2P13080_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00980_001	Banana	mitochondrion	51.63	73.55
KRH14557	Soybean	mitochondrion	28.73	65.63
CDY46329	Canola	mitochondrion	45.53	61.2
CDY37406	Canola	mitochondrion	42.28	61.18
CDY46330	Canola	nucleus	24.12	60.96
PGSC0003DMT400074131	Potato	plastid	40.79	60.44
KRH73571	Soybean	nucleus	47.7	59.16
TraesCS5D01G057800.1	Wheat	mitochondrion	48.1	59.07
Zm00001d041480_P001	Maize	mitochondrion	47.7	58.76
Zm00001d031050_P002	Maize	mitochondrion	48.65	58.76
EES17375	Sorghum	mitochondrion	49.05	58.58
TraesCS5B01G052100.1	Wheat	mitochondrion	47.15	58.29
VIT_12s0142g00670.t01	Wine grape	plastid	51.9	57.51
KRH45952	Soybean	mitochondrion	47.02	57.36
TraesCS5A01G047300.2	Wheat	mitochondrion	47.83	57.31
Bra023836.1-P	Field mustard	mitochondrion	47.7	57.05
KRG99044	Soybean	mitochondrion	49.59	56.92
Os12t0611200-01	Rice	nucleus	48.37	56.85
Solyc07g044760.2.1	Tomato	plastid	48.37	56.67
CDY10634	Canola	mitochondrion	46.21	56.64
HORVU5Hr1G011460.3	Barley	mitochondrion	47.97	56.64
CDY37408	Canola	mitochondrion	45.94	56.41
Bra031349.1-P	Field mustard	mitochondrion	45.94	56.31
AT3G22330.1	Thale cress	mitochondrion	46.61	55.84
AT3G22310.1	Thale cress	mitochondrion	45.8	55.41
Solyc12g006320.1.1	Tomato	plastid	45.53	52.26
GSMUA_Achr2P13070_001	Banana	cytosol	81.3	50.76
KRH14556	Soybean	cytosol	19.24	49.48
GSMUA_Achr2P01980_001	Banana	nucleus	36.99	39.22
GSMUA_Achr11P...	Banana	plastid	37.67	35.92
GSMUA_Achr7P05930_001	Banana	nucleus	25.61	31.14
GSMUA_Achr4P19590_001	Banana	nucleus	26.29	26.94
GSMUA_Achr10P...	Banana	cytosol	14.77	21.29

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr2G13080_001	EnsemblPlants:GSMUA_Achr2P13080_001	EnsemblPlants:GSMUA_Achr2T13080_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0S7J9	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296CB78
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53 [Source:GMGC_GENE;Acc:GSMUA_Achr2G13080_001]

Coordinates

chr2:+:15336661..15342451

Molecular Weight (calculated)

80391.9 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.255

Length

738 amino acids

Sequence
(BLAST)

001: MRPTSSLHRP VSLLINLPPP LPHKYLSRCP LTCPQNPSPS SGVSPSRSLF CGFDHWTMNF LFRRSSSVAA SASRRALAAL VSSESSLLPP SFASASLFPS
101: SADGLVPFYK SARQFEFCCA RRREIHFSAG PLGFRATDVA CAEYAVDDYC EDDRRSPERG GDERLEIAKL GISQDIVTQL ANKGITKLFP IQRAVLEPAM
201: QGQDMIGRAR TGTGKTLAFG IPIMDKIIRF QAKHGCGRNP LAMVLAPTRE LARQVEKEFK ESSKLYTLCV YGGSPINEQM RALNYGVDVV VGTPGRIIDL
301: LNRGALNLSE IQFVVLDEAD QMLNVGFAED VERILDKMPP KRQTMMFSAT MPTWIRKLTR RYLKDPVNID LINKCLYIVA LLNFYIFIIL HSLSCYLNCL
401: FFSSCPQTAN FKVLLTALGP CHCLCFPAIF KFKINTVGDS DQKLAEGITL YSIVSDNYAK PSILGPLIKE HAKGGKCIVF TQTKRDADRL AYSMGRSFGC
501: EALHGDISQN QRERTLAGFR DGRFNILIAT DVAARGLDIP NVDLVIHYEL PNTSELFVHR SGRTGRAGKK GSAILIHSYE QNRVVRGIEQ DIGSSFIELP
601: KIKVEGSGED MIGSMRGGRF DSYGSGRMES GSGRFGSFGG SASGAPSGGS NFGRSDYGDF GSGRSGGFGD SGTGRFGKFG GSGSGRFGSF GNSDSGRSSS
701: FDDSSRSRSS GYGGSSRSSR SSRFGGRSSK DDGDDDWP

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.