Factsheet for PGSC0003DMT400074131

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	25.9	75.0
Solyc12g006320.1.1	Tomato	plastid	95.98	74.34
Zm00001d030797_P001	Maize	mitochondrion	28.31	67.79
Zm00001d048578_P001	Maize	cytosol	29.32	62.39
Os07t0143700-01	Rice	plastid	38.55	58.36
CDY37406	Canola	mitochondrion	58.03	56.67
CDY46329	Canola	mitochondrion	59.04	53.55
GSMUA_Achr7P00980_001	Banana	mitochondrion	54.22	52.12
CDY46330	Canola	nucleus	30.52	52.05
KRH73571	Soybean	nucleus	60.44	50.59
HORVU2Hr1G060640.15	Barley	cytosol	53.61	50.0
CDY37408	Canola	mitochondrion	58.23	48.25
EER97966	Sorghum	mitochondrion	58.23	48.17
Bra031349.1-P	Field mustard	mitochondrion	58.23	48.17
CDY10634	Canola	mitochondrion	58.23	48.17
Bra023836.1-P	Field mustard	mitochondrion	59.24	47.81
VIT_12s0142g00670.t01	Wine grape	plastid	63.86	47.75
AT3G22330.1	Thale cress	mitochondrion	59.04	47.73
Zm00001d018787_P001	Maize	mitochondrion	58.23	47.62
TraesCS5D01G057800.1	Wheat	mitochondrion	57.43	47.59
TraesCS5B01G052100.1	Wheat	mitochondrion	57.03	47.57
TraesCS2A01G253700.1	Wheat	mitochondrion	58.63	47.17
AT3G22310.1	Thale cress	mitochondrion	57.63	47.05
TraesCS2D01G254200.1	Wheat	mitochondrion	58.43	47.01
TraesCS2B01G273300.1	Wheat	plastid	58.43	47.01
Zm00001d041480_P001	Maize	mitochondrion	56.22	46.74
KRH45952	Soybean	mitochondrion	56.43	46.45
Zm00001d031050_P002	Maize	mitochondrion	56.83	46.32
TraesCS5A01G047300.2	Wheat	mitochondrion	57.23	46.27
EES17375	Sorghum	mitochondrion	57.23	46.12
HORVU5Hr1G011460.3	Barley	mitochondrion	57.63	45.92
KRG99044	Soybean	mitochondrion	57.83	44.79
Os12t0611200-01	Rice	nucleus	56.43	44.75
GSMUA_Achr2P13080_001	Banana	plastid	60.44	40.79
PGSC0003DMT400079640	Potato	nucleus	35.54	26.26
GSMUA_Achr2P13070_001	Banana	cytosol	62.25	26.23
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	33.73	25.11
PGSC0003DMT400059139	Potato	cytosol	23.69	23.0
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	24.1	15.62

Protein Annotations

MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M1CT73	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400028812
PGSC:PGSC0003DMG400028812	EnsemblPlants:PGSC0003DMT400074131	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002966A27
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53 [Source:PGSC_GENE;Acc:PGSC0003DMG400028812]

Coordinates

chr12:+:5988135..5993554

Molecular Weight (calculated)

54769.7 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.108

Length

498 amino acids

Sequence
(BLAST)

001: MAFLPCPLRY SKINSLFLLR KSSSSLTSKR VSINSISHIF SDKFSPRNAL PVPQVHSFTT SLTISAPPMN WVDGKFGYSV KGFHGGGCCL QAATATAMAM
101: VDLEEDCEEG LEISKLGISE EIVSALAQRG ITSLFPIQRA VLEPAMQGSD MIGRARTGTG KTLAFGIPIM DKIIRFNRKK GRGRNPLALI LAPTRELARQ
201: VDKEFYESAP VLDTLCVYGG VPISRQMSTL DRGTDIVVGT PGRIIDLLKR GSLNLSDIQF VVLDEADQML NVGFAEDVET ILENIRQKHQ TMMFSATMPS
301: WILKLTKKFL KKPIHVDLVG DSDQKLADGI SLYSIACEMR QKPAVLGPLI SEHAKGGKCI VFTQTKRDAD RLAGAMQRTL RCEALHGDIS QSQRERTLSG
401: FRQGQFNVLV ATDVAARGLD VPNVDLVIHY ELPNNSEIFV HRSGRTGRAG KKGSAILMHS SKQHRDVKGI EHDAGCRFTE SNTSLLPYLE LKLIWVLG

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.