Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g005890.2.1 | Tomato | nucleus | 59.64 | 89.28 |
| PGSC0003DMT400059139 | Potato | cytosol | 59.38 | 88.89 |
| VIT_10s0003g04000.t01 | Wine grape | nucleus | 45.7 | 68.02 |
| TraesCS3A01G243600.1 | Wheat | cytosol | 18.36 | 64.68 |
| GSMUA_Achr10P... | Banana | cytosol | 43.1 | 64.65 |
| CDY44172 | Canola | cytosol | 42.32 | 61.21 |
| Bra033519.1-P | Field mustard | cytosol | 42.06 | 60.83 |
| CDY22890 | Canola | cytosol | 42.06 | 60.83 |
| AT4G15850.1 | Thale cress | nucleus | 41.15 | 60.54 |
| EES07679 | Sorghum | nucleus | 39.32 | 58.19 |
| KRH42587 | Soybean | nucleus | 23.18 | 57.98 |
| Os02t0795900-01 | Rice | nucleus | 39.32 | 57.97 |
| KRH15843 | Soybean | cytosol | 28.52 | 57.78 |
| Zm00001d018375_P001 | Maize | nucleus | 39.06 | 57.36 |
| TraesCS6A01G358500.1 | Wheat | nucleus | 37.89 | 55.32 |
| TraesCS6B01G391200.1 | Wheat | nucleus | 37.89 | 55.32 |
| TraesCS6D01G341300.1 | Wheat | nucleus | 37.63 | 54.94 |
| KRH15837 | Soybean | nucleus | 13.28 | 54.55 |
| HORVU6Hr1G085490.2 | Barley | mitochondrion | 39.58 | 52.96 |
| TraesCS3D01G247800.1 | Wheat | nucleus | 29.82 | 49.89 |
| KRH15846 | Soybean | nucleus | 35.68 | 49.1 |
| HORVU0Hr1G031660.1 | Barley | mitochondrion, nucleus | 9.11 | 46.98 |
| KRH44787 | Soybean | nucleus | 36.85 | 45.87 |
| Zm00001d052036_P001 | Maize | plastid | 10.03 | 36.67 |
| PGSC0003DMT400074131 | Potato | plastid | 15.62 | 24.1 |
| PGSC0003DMT400071859 | Potato | cytosol, nucleus, plastid | 15.1 | 17.34 |
| PGSC0003DMT400079640 | Potato | nucleus | 14.45 | 16.47 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| UniProt:M1AS96 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG401011204 | PGSC:PGSC0003DMG401011204 |
| EnsemblPlants:PGSC0003DMT400029130 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF68 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000294C178 | SEG:seg | : | : |
Description
DEAD-box ATP-dependent RNA helicase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401011204]
Coordinates
chr7:-:1186926..1195917
Molecular Weight (calculated)
84714.8 Da
IEP (calculated)
9.787
GRAVY (calculated)
0.065
Length
768 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEEHAAVKQ PLTANRGFVS GEPVKLQAPT SQRARSSRNP QQPNSTSEPA TPTPAKQRLI WAFFVGFSSS FQLKKVSLTM EEEKGLKKEK KNIPVLPWMR
101: NPVDITTFDQ CSLDLLPFID PRLVAALKNM SITSLFPVQL AVWQETIGPG SFERDLCINS PTGSGKTLAY ALPIVQMLST RAVKCLRALV VLPTRDLALQ
201: VKEVFSALAP AVGLSVGLAV GQSSISDEIS ELIKKPNVEY GICYDPEEFS YELQSAVDIL VATPGRLMDH INNTDGFTLE HLSYLVVDET DRLLREAYQS
301: WLPTVIQLTS SSVDGNFPSS ADLLPCTYGS LKTIRRMGTE RGFKGKAYPR LAKMVLSATL TQDPSKLAQL DLHHPLLLTT GERRYKLPEE LKSFKVLCQS
401: KLKPLYLVSL LQSLQGEKSI VFTSSVESTH RLCTLLKFFD NLEIEFKEYS RLQRQSVRSK TLRAFRSGQV QVLISSDAMT RGMDVEGVRN VINYDMPAYI
501: KTFIHRAGRT ARAGLSGCCF TLMHKDERYN AIPFNLVNGI GYIFKIPTIP SNLVNGIGYI FKIPTIPSNL VNGIGYIFKI PTIPSNLVNG IGYIFKIPTI
601: PSNLVNGIGY IFKIPTIPSN LVNGIGYIFK IPTIPSNLVN GIGYIFKIPT IPSNLVNGIG YIFKIPTIPS NLVNGIGYIF KIPTIPSNLV NGIGYIFKIP
701: TIPSNLVNGI GYIFKIPTIP SNLVNGIGYI FKIPTIPLLP HCPLNAMWNQ IPPGLLSLAT SSPDPTTK
101: NPVDITTFDQ CSLDLLPFID PRLVAALKNM SITSLFPVQL AVWQETIGPG SFERDLCINS PTGSGKTLAY ALPIVQMLST RAVKCLRALV VLPTRDLALQ
201: VKEVFSALAP AVGLSVGLAV GQSSISDEIS ELIKKPNVEY GICYDPEEFS YELQSAVDIL VATPGRLMDH INNTDGFTLE HLSYLVVDET DRLLREAYQS
301: WLPTVIQLTS SSVDGNFPSS ADLLPCTYGS LKTIRRMGTE RGFKGKAYPR LAKMVLSATL TQDPSKLAQL DLHHPLLLTT GERRYKLPEE LKSFKVLCQS
401: KLKPLYLVSL LQSLQGEKSI VFTSSVESTH RLCTLLKFFD NLEIEFKEYS RLQRQSVRSK TLRAFRSGQV QVLISSDAMT RGMDVEGVRN VINYDMPAYI
501: KTFIHRAGRT ARAGLSGCCF TLMHKDERYN AIPFNLVNGI GYIFKIPTIP SNLVNGIGYI FKIPTIPSNL VNGIGYIFKI PTIPSNLVNG IGYIFKIPTI
601: PSNLVNGIGY IFKIPTIPSN LVNGIGYIFK IPTIPSNLVN GIGYIFKIPT IPSNLVNGIG YIFKIPTIPS NLVNGIGYIF KIPTIPSNLV NGIGYIFKIP
701: TIPSNLVNGI GYIFKIPTIP SNLVNGIGYI FKIPTIPLLP HCPLNAMWNQ IPPGLLSLAT SSPDPTTK
001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
Arabidopsis Description
RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.