Factsheet for VIT_10s0003g04000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005890.2.1	Tomato	nucleus	73.45	73.88
PGSC0003DMT400059139	Potato	cytosol	73.06	73.49
GSMUA_Achr10P...	Banana	cytosol	69.77	70.31
AT4G15850.1	Thale cress	nucleus	67.05	66.28
TraesCS3A01G243600.1	Wheat	cytosol	27.13	64.22
Bra033519.1-P	Field mustard	cytosol	64.92	63.09
CDY22890	Canola	cytosol	64.92	63.09
CDY44172	Canola	cytosol	64.92	63.09
KRH15843	Soybean	cytosol	46.32	63.06
Os02t0795900-01	Rice	nucleus	62.21	61.61
KRH42587	Soybean	nucleus	36.63	61.56
EES07679	Sorghum	nucleus	61.43	61.08
TraesCS6A01G358500.1	Wheat	nucleus	61.43	60.27
TraesCS6B01G391200.1	Wheat	nucleus	61.24	60.08
TraesCS6D01G341300.1	Wheat	nucleus	61.05	59.89
Zm00001d018375_P001	Maize	nucleus	60.27	59.46
HORVU6Hr1G085490.2	Barley	mitochondrion	61.43	55.23
KRH15837	Soybean	nucleus	19.96	55.08
TraesCS3D01G247800.1	Wheat	nucleus	48.06	54.03
KRH15846	Soybean	nucleus	53.29	49.28
KRH44787	Soybean	nucleus	58.72	49.11
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	13.95	48.32
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	68.02	45.7
Zm00001d052036_P001	Maize	plastid	15.5	38.1
VIT_08s0007g03740.t01	Wine grape	extracellular	4.07	27.63
VIT_12s0142g00670.t01	Wine grape	plastid	22.87	17.72
VIT_14s0060g00060.t01	Wine grape	plastid	25.78	17.41
VIT_16s0022g02110.t01	Wine grape	plastid	22.29	16.57

Protein Annotations

EntrezGene:100258315	wikigene:100258315	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI30939	ProteinID:CBI30939.3
UniProt:D7TKB7	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100258315	wikigene:LOC100258315	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGR:TC60019	TMHMM:TMhelix	UniParc:UPI00015CAE3F	ArrayExpress:VIT_10s0003g04000
EnsemblPlantsGene:VIT_10s0003g04000	EnsemblPlants:VIT_10s0003g04000.t01	unigene:Vvi.7248	RefSeq:XP_002279094	RefSeq:XP_002279094.1	SEG:seg

Description

No Description!

Coordinates

chr10:-:6774569..6791623

Molecular Weight (calculated)

57574.4 Da

IEP (calculated)

9.817

GRAVY (calculated)

-0.136

Length

516 amino acids

Sequence
(BLAST)

001: MKEAKQKKNV PVLPWMRSPI DVSLFEECPL HLFPCLDPRL EVALKNMGFS SLFPVQVAVW QETVGPGAFE RDLCINSPTG SGKTLAYALP IVNVLSSRAV
101: KCLRALVVLP TRDLALQVKE VFAAIAPAVG LSVGLAVGQT SIADEISELI KRPKLEAGIC YDPEDISLEL QSSVDILVAT PGRLMDHINT TKGFTLKHLR
201: YLVVDETDRL LREAYQSWLP TVLQLTRSSD ESLFPCGKTI LPSTFGSMNT IRRCGVERGF KGRSYPRLVK IVLSATLTQD PSKLALLDLH HPLLLTAGQR
301: RYQLPEKLKS FKLICESKLK PLYLVALLRD LGGEKCIVFT SSVESAHRLC TLLNFFGDLQ IKIGEYSGLQ HQRVRSKTLE EFRGGKIQVL ISSDGMTRGM
401: DVEGVRNVIN YDVPKFIKTY IHRAGRTARA GQTGRCFTLL RKDEDKRFKQ LLQKADSDSC PVHSVASNSI EALHSVYVSA LEKLKETVVS ETTRKRKINF
501: KSSGADKRKQ EKHLKE

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.