Factsheet for TraesCS3A01G243600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	33.49	48.99
KRH15837	Soybean	nucleus	41.28	48.13
Zm00001d052036_P001	Maize	plastid	38.53	40.0
TraesCS6A01G358500.1	Wheat	nucleus	94.95	39.35
KRH42587	Soybean	nucleus	51.83	36.81
Os02t0795900-01	Rice	nucleus	83.49	34.93
EES07679	Sorghum	nucleus	82.11	34.49
GSMUA_Achr10P...	Banana	cytosol	70.18	29.88
Solyc07g005890.2.1	Tomato	nucleus	64.22	27.29
VIT_10s0003g04000.t01	Wine grape	nucleus	64.22	27.13
PGSC0003DMT400059139	Potato	cytosol	63.76	27.1
AT4G15850.1	Thale cress	nucleus	61.93	25.86
Bra033519.1-P	Field mustard	cytosol	62.39	25.61
CDY44172	Canola	cytosol	62.39	25.61
CDY22890	Canola	cytosol	62.39	25.61
KRH15843	Soybean	cytosol	38.07	21.9
KRH15846	Soybean	nucleus	53.67	20.97
KRH44787	Soybean	nucleus	54.13	19.12
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	64.68	18.36
TraesCS2A01G253700.1	Wheat	mitochondrion	24.77	8.72
TraesCS5A01G308900.1	Wheat	nucleus	26.61	8.3
TraesCS5A01G047300.2	Wheat	mitochondrion	23.39	8.28
TraesCS4A01G367700.1	Wheat	nucleus	27.52	7.84

Protein Annotations

EnsemblPlants:TraesCS3A01G243600.1	EnsemblPlantsGene:TraesCS3A01G243600	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase
PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	PFAM:PF00270	PFscan:PS51192	SMART:SM00487	SUPFAM:SSF52540
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:456908906..456910583

Molecular Weight (calculated)

24255.7 Da

IEP (calculated)

4.818

GRAVY (calculated)

0.028

Length

218 amino acids

Sequence
(BLAST)

001: MVTMKMKELE DGVPEECVPH LPWMRHPVDI DSFSGCPVTS LPRLDPRLAE ALQRMGIESF FLVQVSTWLE TIGPGAFQRD ICINSPTGSG KTLAYALPIV
101: QALSTRKVRC LRALVVLPTR DLALQVKEVF DAIAPVMGLT VASAIGRSSI ADEISDLIKK SKQELYPSLD DEYVEMEPQT KVDILVATPG RLMDHINMTK
201: GFSLEHLQYL VVDETDRM

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.