Factsheet for Bra033519.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22890	Canola	cytosol	99.81	99.81
AT4G15850.1	Thale cress	nucleus	81.36	82.76
VIT_10s0003g04000.t01	Wine grape	nucleus	63.09	64.92
Solyc07g005890.2.1	Tomato	nucleus	61.77	63.94
PGSC0003DMT400059139	Potato	cytosol	61.21	63.35
TraesCS3A01G243600.1	Wheat	cytosol	25.61	62.39
GSMUA_Achr10P...	Banana	cytosol	58.76	60.94
KRH42587	Soybean	nucleus	33.15	57.33
EES07679	Sorghum	nucleus	54.8	56.07
Os02t0795900-01	Rice	nucleus	54.43	55.47
TraesCS6A01G358500.1	Wheat	nucleus	54.61	55.13
TraesCS6B01G391200.1	Wheat	nucleus	54.43	54.94
TraesCS6D01G341300.1	Wheat	nucleus	54.24	54.75
KRH15843	Soybean	cytosol	38.79	54.35
Zm00001d018375_P001	Maize	nucleus	53.48	54.3
KRH15837	Soybean	nucleus	18.27	51.87
HORVU6Hr1G085490.2	Barley	mitochondrion	54.99	50.87
TraesCS3D01G247800.1	Wheat	nucleus	42.18	48.8
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	12.99	46.31
KRH15846	Soybean	nucleus	47.65	45.34
KRH44787	Soybean	nucleus	51.04	43.92
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	60.83	42.06
Zm00001d052036_P001	Maize	plastid	14.31	36.19
Bra031349.1-P	Field mustard	mitochondrion	21.66	19.1
Bra023836.1-P	Field mustard	mitochondrion	22.03	18.96
Bra020533.1-P	Field mustard	plastid	25.99	18.67
Bra036582.1-P	Field mustard	plastid	25.99	18.57
Bra009900.1-P	Field mustard	plastid	25.99	18.45
Bra035903.1-P	Field mustard	nucleus	20.53	17.22
Bra029275.1-P	Field mustard	nucleus	20.34	16.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra033519	EnsemblPlants:Bra033519.1	EnsemblPlants:Bra033519.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006605	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4EXI2
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PRINTS:PR00906	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	InterPro:SecA	UniParc:UPI00025448C5	SEG:seg	:	:

Description

AT4G15850 (E=8e-243) ATRH1 | ATRH1; ATP-dependent helicase/ DEAD/H-box RNA helicase binding

Coordinates

chrA01:-:11455611..11458346

Molecular Weight (calculated)

58411.7 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.174

Length

531 amino acids

Sequence
(BLAST)

001: MVEEEKDGEA QAQEETTNLV VPWMRAPVDV SHVDSCSLQT LPSLHPRLKE ALEKMGISSL FPVQVAVWHE TIGPGGFERD VCVNSPTGSG KTLSYALPIV
101: QTLSSRAVRC LRALVVLPTR DLALQVKGVF DAIAPSVGLS VGSAVGQSSI AGDIAQLIKT PKLDAGICYD PEDISQNLES SAVDILVATP GRLMDHINNT
201: KGFTLEHLRY LVVDETDRLL RESYQEWLPT VLKLTQASDD GLFPSSTPFV PSAFGSLQTI RRQSVERGFK GKPYPRLAKL ALSATLTQDP SKLIQLDLHH
301: PLFMTTGATR YRLPEKLECL RLICETGVKP VYLVGLLKAL EGEKCIVFTS SVETTRRLCK LLNFFGDSMI KAKEYSGGLN QAVRSKEIKA FRKGDIKVLI
401: SSDALARGMD VELVTNVINY DMPQYPKTFI HRAGRTARAG RDGRCFTLLG DHEVRRFSSL LKKVGNASCP IYPIPPDLFA PVRAIYEPAL AKLKESVEPI
501: APKRGRQVGF KHNSRTTNSQ TKRNKATSEQ A

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.