Factsheet for Bra029275.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030819.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Bra030819.1-P	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035903.1-P	Field mustard	nucleus	81.64	84.99
AT5G62190.1	Thale cress	nucleus	79.06	77.65
CDY28363	Canola	plastid	31.41	75.55
GSMUA_Achr7P05930_001	Banana	nucleus	58.57	63.59
VIT_16s0022g02110.t01	Wine grape	plastid	66.62	63.26
PGSC0003DMT400079640	Potato	nucleus	64.34	62.91
Solyc03g007010.2.1	Tomato	nucleus	64.64	62.46
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	62.52	61.58
KRG91400	Soybean	nucleus	64.19	61.04
HORVU5Hr1G080170.2	Barley	nucleus	59.94	60.96
KRH35418	Soybean	endoplasmic reticulum	64.04	60.55
Solyc06g035450.2.1	Tomato	nucleus	35.81	58.85
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	61.0	57.43
TraesCS5B01G309500.1	Wheat	nucleus	61.0	57.43
TraesCS5A01G308900.1	Wheat	nucleus	60.7	57.22
Zm00001d006160_P001	Maize	nucleus	59.94	56.11
Os09t0520700-01	Rice	nucleus, plastid	59.18	56.03
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	21.24	56.0
GSMUA_Achr4P19590_001	Banana	nucleus	61.0	55.83
EER97062	Sorghum	nucleus	59.94	55.56
Zm00001d021196_P004	Maize	nucleus	58.73	54.74
CDY34116	Canola	cytosol	30.96	40.0
Zm00001d035226_P001	Maize	plasma membrane	19.88	37.64
Zm00001d049075_P001	Maize	extracellular, golgi	25.95	35.33
Zm00001d050438_P002	Maize	extracellular	16.39	33.54
Zm00001d035797_P001	Maize	mitochondrion	28.83	33.33
Zm00001d049254_P001	Maize	cytosol	9.56	32.98
Zm00001d046048_P001	Maize	cytosol	8.95	31.38
Zm00001d024138_P001	Maize	plastid	13.2	30.85
Bra036582.1-P	Field mustard	plastid	34.45	30.55
Bra020533.1-P	Field mustard	plastid	34.14	30.45
Bra009900.1-P	Field mustard	plastid	34.29	30.21
Bra023836.1-P	Field mustard	mitochondrion	28.22	30.15
Bra031349.1-P	Field mustard	mitochondrion	27.31	29.9
CDY44622	Canola	cytosol	32.02	24.42
Bra033519.1-P	Field mustard	cytosol	16.39	20.34

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra029275	EnsemblPlants:Bra029275.1	EnsemblPlants:Bra029275.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4EKF8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237
InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF54928	UniParc:UPI0002545BB9	SEG:seg	:	:	:

Description

AT5G62190 (E=6e-177) PRH75 | PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding

Coordinates

chrA02:-:26188936..26192814

Molecular Weight (calculated)

71463.0 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.400

Length

659 amino acids

Sequence
(BLAST)

001: MPSLALSEEK KMKKSTSSET TTAAATTPDS KKKKEKKPKK LSDSDGEEDS EKKKSKKKKR KAAAESSDSG SELVEPESSK KKSSKKVKLS VVEDVKVVEN
101: PNAVSKFRIS DPLREKLKEK GIEALFPIQA TTFDMVLDGA DLVGRARTGQ GKTLAFVLPI LESLINGPAK NKRKNGYGRP PSVLVLLPTR ELAKQVFADF
201: DAYGGSVGLT SCCVYGGDPY PPQQQKLKKG VDIVDHIERQ NLDLTYLQFR VLDEADEMLR MGFVDDVELI LGKVEDPKKV QTLLFSATLP SWVQNIASRF
301: LKQDKKTIDL VGNDKMKASN SVRHIALPCS KQAMSRLIPD IISLYSSGGS TIIFTETKDQ ASELSGLLPG ARALHGDIQQ SQREITLAGF RKGKFSTLVA
401: TNVAARGLDI NDVQLIIQCE PPRDVEDYIH RSGRTGRAGN TGVAVMLYDS RKSGVSRIEK QAGIKFEHVS APQPNDIAKA IGMEAAEKIT QVCDTVVPAF
501: LAAAKELLES SGVSAEVLLA KALAKTAGFT EIKKRSLLTS MENHVTLHLE AGRPIYSATN AFSVLRRVLP DDKVNLIEGM TLTVDGGAVF DVVQSDVDQF
601: IAAGQKNAGS MSLEVVKEMP KLQEREPVQR RYGGGGGRFG RGGGGGGRFG RGGGRGQRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.