Factsheet for HORVU5Hr1G080170.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G015670.5
HORVU1Hr1G040970.1
HORVU6Hr1G042040.1
HORVU7Hr1G107520.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	HORVU1Hr1G015670.5	AT1G53720.1	16497658
AT5G62190.1	HORVU1Hr1G040970.1	AT1G53720.1	16497658
AT5G62190.1	HORVU6Hr1G042040.1	AT1G53720.1	16497658
AT5G62190.1	HORVU7Hr1G107520.5	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	96.14	89.0
TraesCS5B01G309500.1	Wheat	nucleus	96.14	89.0
TraesCS5A01G308900.1	Wheat	nucleus	95.83	88.84
Os09t0520700-01	Rice	nucleus, plastid	81.94	76.29
EER97062	Sorghum	nucleus	81.33	74.12
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	28.55	74.0
Zm00001d006160_P001	Maize	nucleus	80.09	73.72
Zm00001d021196_P004	Maize	nucleus	80.25	73.55
GSMUA_Achr7P05930_001	Banana	nucleus	67.13	71.66
GSMUA_Achr4P19590_001	Banana	nucleus	68.83	61.94
CDX87236	Canola	nucleus	60.65	61.7
CDY16789	Canola	nucleus	59.88	61.1
Bra035903.1-P	Field mustard	nucleus	59.41	60.82
Bra029275.1-P	Field mustard	nucleus	60.96	59.94
PGSC0003DMT400079640	Potato	nucleus	62.19	59.79
KRH35418	Soybean	endoplasmic reticulum	63.89	59.4
Solyc03g007010.2.1	Tomato	nucleus	62.5	59.38
VIT_16s0022g02110.t01	Wine grape	plastid	63.58	59.37
AT5G62190.1	Thale cress	nucleus	61.42	59.31
KRG91400	Soybean	nucleus	63.43	59.31
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	60.34	58.45
CDY28363	Canola	plastid	23.92	56.57
Solyc06g035450.2.1	Tomato	nucleus	34.41	55.61
Zm00001d035226_P001	Maize	plasma membrane	25.31	47.13
Zm00001d035797_P001	Maize	mitochondrion	38.73	44.04
Zm00001d049075_P001	Maize	extracellular, golgi	32.1	42.98
Zm00001d050438_P002	Maize	extracellular	21.3	42.86
Zm00001d049254_P001	Maize	cytosol	12.5	42.41
Zm00001d046048_P001	Maize	cytosol	12.04	41.49
Zm00001d024138_P001	Maize	plastid	17.28	39.72
HORVU2Hr1G060640.15	Barley	cytosol	26.39	32.02
HORVU5Hr1G011460.3	Barley	mitochondrion	30.25	31.36
CDY34116	Canola	cytosol	22.53	28.63
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	5.09	22.15
HORVU6Hr1G085490.2	Barley	mitochondrion	17.13	19.34
CDY44622	Canola	cytosol	24.38	18.29

Protein Annotations

Gene3D:3.30.70.1800	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287RZ11	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0016787	InterPro:GUCT	EnsemblPlantsGene:HORVU5Hr1G080170	EnsemblPlants:HORVU5Hr1G080170.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF327	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI000B46E9F7	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:559200109..559204208

Molecular Weight (calculated)

69950.4 Da

IEP (calculated)

9.615

GRAVY (calculated)

-0.402

Length

648 amino acids

Sequence
(BLAST)

001: KDKKDKKRKI KEPASSDEEG QSSTSSESEP APAAKKAKKE KKDKKAKAEE PANDDGELTA SGEEEEPADP NALANFRISE PLKDKLKSKG INALFPIQAT
101: TFGLVLDGKD LVGRARTGQG KTLAFVLPIL ESLVNGPHKA TRRTDYGRPP SVLVLLPTRE LANQVHADFE FYGGTFGLST CCAYGGSPYR PQENALRNGV
201: DIVVGTPGRV KDLIQKNKLN LWCLKFRVLD EADEMLNMGF KDDVELILGK VEDVTKVQTL LFSATLPDWV KKLSMSFLKA DRKTVDLVGN EKMKASASVR
301: HLALPCNKAA RSQIIPDIIK CYSHGGRTII FTETKESASE LSSLIPGSRA LHGDIAQAQR EVVIAGFRSG KFLVLVATNV AARGLDINDV QLIIQCEPPR
401: DVEAYIHRSG RTGRAGNTGI AVMLFDPRYK FGVSRIERES GVKFEHISAP QPTDVAQSAG NEAAEAISSV SDSVIPVFRQ QAEELLSSSS MSAVDLLAKA
501: LAKAVGYTDI KKRSLLSSME NHTTLHLQTG RSMYTPSFVI STLKRFMPED RLSSVHGITL TSDGTSAVFD VPSAEVQDYI QGAENAAGLT IDEVKQLPAL
601: QEREQSKGNF GGSRFGRGGG GRRFGGGGGG RFGGGRGRGG GGGRFNRR

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.