Factsheet for Os09t0520700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0670400-00
Os06t0670500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Os06t0670400-00	AT1G53720.1	16497658
AT5G62190.1	Os06t0670500-01	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G080170.2	Barley	nucleus	76.29	81.94
TraesCS5A01G308900.1	Wheat	nucleus	80.32	79.97
TraesCS5B01G309500.1	Wheat	nucleus	80.32	79.86
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	80.32	79.86
EER97062	Sorghum	nucleus	81.18	79.47
Zm00001d021196_P004	Maize	nucleus	79.89	78.64
Zm00001d006160_P001	Maize	nucleus	79.45	78.55
GSMUA_Achr7P05930_001	Banana	nucleus	63.79	73.15
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	26.15	72.8
GSMUA_Achr4P19590_001	Banana	nucleus	67.53	65.28
VIT_16s0022g02110.t01	Wine grape	plastid	60.92	61.1
KRG91400	Soybean	nucleus	60.2	60.46
CDX87236	Canola	nucleus	55.03	60.13
KRH35418	Soybean	endoplasmic reticulum	60.2	60.11
CDY16789	Canola	nucleus	54.74	60.0
PGSC0003DMT400079640	Potato	nucleus	57.9	59.79
Bra035903.1-P	Field mustard	nucleus	54.31	59.72
Bra029275.1-P	Field mustard	nucleus	56.03	59.18
AT5G62190.1	Thale cress	nucleus	56.9	59.02
Solyc03g007010.2.1	Tomato	nucleus	57.76	58.94
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	56.47	58.74
Solyc06g035450.2.1	Tomato	nucleus	33.19	57.61
CDY28363	Canola	plastid	21.55	54.74
Zm00001d035226_P001	Maize	plasma membrane	23.56	47.13
Zm00001d035797_P001	Maize	mitochondrion	35.63	43.51
Zm00001d049075_P001	Maize	extracellular, golgi	30.03	43.18
Zm00001d049254_P001	Maize	cytosol	11.49	41.88
Zm00001d050438_P002	Maize	extracellular	19.25	41.61
Zm00001d046048_P001	Maize	cytosol	11.21	41.49
Zm00001d024138_P001	Maize	plastid	15.95	39.36
Os03t0827700-01	Rice	nucleus	35.49	34.16
Os07t0143700-01	Rice	plastid	15.09	31.91
Os12t0611200-01	Rice	nucleus	26.72	29.62
CDY34116	Canola	cytosol	20.69	28.24
Os02t0795900-01	Rice	nucleus	15.66	20.92
CDY44622	Canola	cytosol	22.41	18.06

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4347610	EMBL:AK101403	ProteinID:BAD46678.1	ProteinID:BAF25616.1
ProteinID:BAT09010.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os09g0520700	EnsemblPlants:Os09t0520700-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237
UniProt:Q650T9	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI000043A5F5	RefSeq:XP_015612293.1	SEG:seg	:

Description

RNA helicase 7Similar to RNA helicase. (Os09t0520700-01);Similar to DEAD/DEAH box helicase family protein. (Os09t0520700-02)

Coordinates

chr9:+:20342788..20347184

Molecular Weight (calculated)

75030.3 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.380

Length

696 amino acids

Sequence
(BLAST)

001: MPSLPVAAAE PMAVDESASK KSKRKLKAAE VEVEASSRKK EKKEKKRKAK EPSPSSSSSS EEEERSSTSS DEPAPAAKKA KKEKTKEKVV VEEEEEDDDE
101: GELTASGDED PADPNALANF RISESLREKL KSKGIKALFP IQATTFDLVL DGHDLVGRAR TGQGKTLAFV LPILESLVNG THKASRRTDY GRPPTVLVLL
201: PTRELAKQVH TDFAFYGATF GLSACCVYGG SDYRSQEMAI RKGVDIVVGT PGRVKDFVEK GTLNFRSLKF RVLDEADEML NMGFVDDVEL ILGKVEDVTK
301: VQTLLFSATI PEWVKKLSLR FLKSGKKTVD LVGDEKLKAS ASVRHLALPC NRAARAQVIP DIIRCYSRGG RTIIFTETKE SASDLSGLIA GSRALHGDVA
401: QAQREVILAG FRSGKFLVLV ATNVAARGLD INDVQLIIQC EPPRDVEAYI HRSGRTGRAG NTGVAVMLFE PRYKFNVNRI ERESGVKFEH ISAPQPTDVA
501: QSAGTEAAEA ISSVSDSVIP VFREQAEQLL NSSGMSAVDL LAKALAKAVG YTDIKKRSLL SSMDNHTTLL LQTGRSVYAA GFVLSTLKRF MPEERLADVK
601: GITITADGTG AVFDVPSAEV EDYIQGAQNA AMVTVEEVKQ LPPLQEREQS GGSRGGGRFG NRRFSGGGGG RGGGGRGFGG GRGRGGGGGN RFNKRY

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.