Factsheet for Bra035903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030819.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Bra030819.1-P	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16789	Canola	nucleus	98.74	98.43
Bra029275.1-P	Field mustard	nucleus	84.99	81.64
AT5G62190.1	Thale cress	nucleus	78.04	73.62
VIT_16s0022g02110.t01	Wine grape	plastid	68.25	62.25
GSMUA_Achr7P05930_001	Banana	nucleus	59.08	61.61
PGSC0003DMT400079640	Potato	nucleus	65.4	61.42
Solyc03g007010.2.1	Tomato	nucleus	65.72	61.0
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	64.14	60.69
Solyc06g035450.2.1	Tomato	nucleus	38.39	60.6
KRG91400	Soybean	nucleus	65.09	59.45
HORVU5Hr1G080170.2	Barley	nucleus	60.82	59.41
KRH35418	Soybean	endoplasmic reticulum	65.09	59.11
TraesCS5B01G309500.1	Wheat	nucleus	62.4	56.43
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	62.4	56.43
TraesCS5A01G308900.1	Wheat	nucleus	62.09	56.22
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	21.8	55.2
Zm00001d006160_P001	Maize	nucleus	61.14	54.97
EER97062	Sorghum	nucleus	61.14	54.43
Os09t0520700-01	Rice	nucleus, plastid	59.72	54.31
Zm00001d021196_P004	Maize	nucleus	60.35	54.03
GSMUA_Achr4P19590_001	Banana	nucleus	61.14	53.75
Zm00001d035797_P001	Maize	mitochondrion	29.23	32.46
Zm00001d035226_P001	Maize	plasma membrane	17.69	32.18
Zm00001d049075_P001	Maize	extracellular, golgi	23.7	30.99
Bra020533.1-P	Field mustard	plastid	35.7	30.58
Bra036582.1-P	Field mustard	plastid	35.7	30.42
Bra023836.1-P	Field mustard	mitochondrion	29.38	30.15
Bra009900.1-P	Field mustard	plastid	35.55	30.08
Zm00001d050438_P002	Maize	extracellular	15.17	29.81
Bra031349.1-P	Field mustard	mitochondrion	27.8	29.24
Zm00001d024138_P001	Maize	plastid	11.53	25.89
Zm00001d049254_P001	Maize	cytosol	7.27	24.08
Zm00001d046048_P001	Maize	cytosol	6.64	22.34
Bra033519.1-P	Field mustard	cytosol	17.22	20.53

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra035903	EnsemblPlants:Bra035903.1	EnsemblPlants:Bra035903.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4F4A3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF327	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI0002542090	SEG:seg	:	:

Description

AT5G62190 (E=2e-177) PRH75 | PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding

Coordinates

chrA09:-:2994050..2997151

Molecular Weight (calculated)

69052.3 Da

IEP (calculated)

10.062

GRAVY (calculated)

-0.383

Length

633 amino acids

Sequence
(BLAST)

001: MPSLALSDKK KEEKKMKKKI DLESTTPEQQ DSKKKAKKLK LSDSDGEEKK SKKKRKSIDE SEEEPEKKSS KKVKLSVVED VKVDNPNAVS NFRISDPLKA
101: KLKEKGIEAL FPIQATTFDM VLDGADLVGR ARTGQGKTLA FVLPILESLI NGPAKSKRKN GYGRPPSVLV LLPTRELAKQ VFADFEAYGG AVGLAACCVY
201: GGDPYAPQEH KLKRGVDIVV GTPGRIKDHI ERRNLDLTYL QFRVLDEADE MLRMGFVDDV ELILGKVEDP KKVQTLLFSA TLPSWVQTIA ARFLKQDKKT
301: IDLVGNDKMK ASNSARHIAL PCSKQAMSRL IPDIISLYSS GGSTIIFTET KDQASELSGL LPGARALHGD IQQSQREITL AGFRKGKFST LVATNVAARG
401: LDINDVQLII QCEPPRDVED YIHRSGRTGR AGNTGVAVML YDSRKSGVSR AVGMEAAEKI TQVCDSVVPA FMAAAKELLE SSGVSAEVLL AKALAKTAGF
501: TEIKKRSLLS SLENHVTLLF EAGKPIYTPS FVFGALKRIL PEDKVNTIEG FTLTADGQGA VFDVAQSDVD QFMSAAQKTA SVSLEIVKEL PKLQEREPMP
601: RGRFGRQGGQ GFNNRGRGGR FGRGRGGGGS QRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.