CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88795

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	EER88795	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006160_P001	Maize	nucleus	94.8	95.74
Zm00001d021196_P004	Maize	nucleus	94.94	95.47
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	28.83	82.0
HORVU5Hr1G080170.2	Barley	nucleus	74.12	81.33
Os09t0520700-01	Rice	nucleus, plastid	79.47	81.18
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	79.18	80.43
TraesCS5B01G309500.1	Wheat	nucleus	79.18	80.43
TraesCS5A01G308900.1	Wheat	nucleus	78.62	79.97
GSMUA_Achr7P05930_001	Banana	nucleus	63.57	74.46
GSMUA_Achr4P19590_001	Banana	nucleus	66.67	65.83
KRG91400	Soybean	nucleus	59.92	61.47
CDY16789	Canola	nucleus	54.85	61.42
CDX87236	Canola	nucleus	54.99	61.38
Bra035903.1-P	Field mustard	nucleus	54.43	61.14
PGSC0003DMT400079640	Potato	nucleus	57.67	60.83
KRH35418	Soybean	endoplasmic reticulum	59.49	60.69
VIT_16s0022g02110.t01	Wine grape	plastid	58.65	60.09
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	56.4	59.94
Bra029275.1-P	Field mustard	nucleus	55.56	59.94
Solyc03g007010.2.1	Tomato	nucleus	57.38	59.82
AT5G62190.1	Thale cress	nucleus	56.26	59.61
Solyc06g035450.2.1	Tomato	nucleus	33.33	59.1
CDY28363	Canola	plastid	21.24	55.11
Zm00001d035226_P001	Maize	plasma membrane	26.16	53.45
Zm00001d035797_P001	Maize	mitochondrion	39.1	48.77
Zm00001d049075_P001	Maize	extracellular, golgi	32.77	48.14
Zm00001d050438_P002	Maize	extracellular	21.1	46.58
Zm00001d049254_P001	Maize	cytosol	12.38	46.07
Zm00001d046048_P001	Maize	cytosol	11.96	45.21
Zm00001d024138_P001	Maize	plastid	16.6	41.84
KXG37219	Sorghum	plastid	33.76	31.25
EES17375	Sorghum	mitochondrion	27.0	31.07
EER97966	Sorghum	mitochondrion	24.75	29.24
CDY34116	Canola	cytosol	20.53	28.63
EES07679	Sorghum	nucleus	15.33	21.0
CDY44622	Canola	cytosol	22.08	18.17
OQU76875	Sorghum	cytosol	0.28	4.35

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8054863	UniProt:C5X615	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EER97062	ProteinID:EER97062	ProteinID:EER97062.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3002G268100	SUPFAM:SSF52540
SUPFAM:SSF54928	unigene:Sbi.17774	UniParc:UPI0001A83911	RefSeq:XP_002460541.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:65219009..65223442

Molecular Weight (calculated)

75904.1 Da

IEP (calculated)

9.723

GRAVY (calculated)

-0.386

Length

711 amino acids

Sequence
(BLAST)

001: MSPALASAVE PMAVDDSASK KAKRKQLKAA AAAAEAEAEA ASAKKKEKKE KKRKAKEPSP PPPSASSSDE EEKSSTSSEE TAPAAKKAKK EKTKKNVEVS
101: SSASDDDGEI TASSDEDPAD PNALTNFRIS EPLRQSLRSK GIKALFPIQA TTFDLVLDGN DLVGRARTGQ GKTLAFVLPI LESLVNGAHK ASRRTEHGRT
201: PSVIVLLPTR ELANQVHADF EFYGATFGLS ACCVYGGSPY RPQEMALRRG VDIVVGTPGR VKDFIVKGTL NLKNLKFRVL DEADEMLNMG FVDDVELILG
301: KVEDATKVQT LLFSATLPDW VNKLSMRFLK VDRKTVDLVG NEKLKASASV KHLALPCNKA ARAQVIPDII RCYSHGGRTI IFTETKDSAS ELSGLIPGSR
401: ALHGDVVQAQ REVILAGFRG GKFQVLVATN VAARGLDIND VQLIIQCEPP RDVEAYIHRS GRTGRAGNTG VAVMLYEPRY KYSVNRLERE SGVKFEHISA
501: PQPTDVAQSA GSEAADAISS VSDSVIPVFR QQAEQLLSSS SLSAADLLAK ALAKAVGYTD IKKRSLLSSM EDYTTLHLQT GRPMWSPGFA FTILKRFMPE
601: EKLADVKGAT LTADGTGVVF DVPAADVEDY IQASENAAQV TIDEVKQLPP LQEKEQSRGN SGGGRFGRGG GGRFSGGGRG GGFGGGGRGR GGGGRGFSGR
701: GGGGNRFNRR N

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.