CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76875	Sorghum	cytosol	8.86	100.0
Zm00001d018375_P001	Maize	nucleus	95.57	94.84
Os02t0795900-01	Rice	nucleus	88.05	87.72
TraesCS6A01G358500.1	Wheat	nucleus	83.62	82.51
TraesCS6B01G391200.1	Wheat	nucleus	83.24	82.13
TraesCS3A01G243600.1	Wheat	cytosol	34.49	82.11
TraesCS6D01G341300.1	Wheat	nucleus	83.04	81.94
TraesCS3D01G247800.1	Wheat	nucleus	68.59	77.56
HORVU6Hr1G085490.2	Barley	mitochondrion	82.85	74.91
GSMUA_Achr10P...	Banana	cytosol	66.86	67.77
PGSC0003DMT400059139	Potato	cytosol	63.01	63.74
Solyc07g005890.2.1	Tomato	nucleus	63.01	63.74
VIT_10s0003g04000.t01	Wine grape	nucleus	61.08	61.43
AT4G15850.1	Thale cress	nucleus	56.07	55.75
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	15.99	55.7
CDY44172	Canola	cytosol	56.26	54.99
Bra033519.1-P	Field mustard	cytosol	56.07	54.8
CDY22890	Canola	cytosol	56.07	54.8
KRH15843	Soybean	cytosol	38.54	52.77
KRH42587	Soybean	nucleus	31.21	52.77
KRH15837	Soybean	nucleus	17.73	49.2
KRH15846	Soybean	nucleus	44.51	41.4
KRH44787	Soybean	nucleus	48.75	41.0
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	58.19	39.32
EER97966	Sorghum	mitochondrion	21.39	18.44
EES17375	Sorghum	mitochondrion	21.77	18.28
KXG37219	Sorghum	plastid	25.24	17.06
EER97062	Sorghum	nucleus	21.0	15.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082742	UniProt:C5XUG2	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EES07679	ProteinID:EES07679	ProteinID:EES07679.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	ProteinID:OQU85882.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3004G330000	SUPFAM:SSF52540	UniParc:UPI0001A862A8	RefSeq:XP_002454703.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:66371715..66380444

Molecular Weight (calculated)

58624.2 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.308

Length

519 amino acids

Sequence
(BLAST)

001: MVAMVRKDEE EGPADRVPHL PWMRCPVDID TFSGCPVTQL PRLDPRLAEA LQRMGIESFF PVQEAAWLET IGPGAFERDI CINSPTGSGK TLAYALPIVQ
101: MLCKRKVRCL RALVVLPTRD LALQVKEVFD AIAPVVGLSV GSAVGQSSIA DEVSRLVQKP KQEFYPTIDE EYVQMEPQTK IDILVATPGR LMDHINMTNG
201: FSLEHLQYLV IDETDRMLRE AYQSWLPTVI QLTHSIGQDH SWHDIDGKTL LHPLTTIRRS GVERGFKGKC YPRLAKIVLS ATLTQDPSKL SQLELHHPLL
301: LNSGKKRYRI PTKLESYKLI CKSNLKPLSL IVLLQELQGN KCLVFTSSVE SSHRLSTLLC FFENLPFKFS EYSRLQREST RRKTLEAFKE GKIDVLIGTD
401: RMARGIHIDG LRYVINYDMP PYVKTYIHRA GRTARAGESG SCFTFLRKHE VKTFDKMLKK ADNASCSLHS LPEESIETLR PTFSSALRKL EESLESEAAK
501: KSNLGDKMPG ASKRKRSNQ

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.