CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42587	Soybean	nucleus	55.41	68.4
KRH15837	Soybean	nucleus	30.87	62.57
KRH15846	Soybean	nucleus	80.74	54.84
KRH44787	Soybean	nucleus	88.92	54.62
VIT_10s0003g04000.t01	Wine grape	nucleus	63.06	46.32
PGSC0003DMT400059139	Potato	cytosol	59.37	43.86
Solyc07g005890.2.1	Tomato	nucleus	58.84	43.47
GSMUA_Achr10P...	Banana	cytosol	56.73	41.99
AT4G15850.1	Thale cress	nucleus	55.67	40.42
CDY44172	Canola	cytosol	54.88	39.17
Bra033519.1-P	Field mustard	cytosol	54.35	38.79
CDY22890	Canola	cytosol	54.35	38.79
EES07679	Sorghum	nucleus	52.77	38.54
Os02t0795900-01	Rice	nucleus	52.77	38.39
TraesCS3A01G243600.1	Wheat	cytosol	21.9	38.07
Zm00001d018375_P001	Maize	nucleus	52.51	38.05
TraesCS6A01G358500.1	Wheat	nucleus	52.24	37.64
TraesCS6D01G341300.1	Wheat	nucleus	52.24	37.64
TraesCS6B01G391200.1	Wheat	nucleus	51.98	37.45
TraesCS3D01G247800.1	Wheat	nucleus	44.59	36.82
HORVU6Hr1G085490.2	Barley	mitochondrion	53.3	35.19
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	57.78	28.52
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	9.76	24.83
Zm00001d052036_P001	Maize	plastid	12.93	23.33
KRH14557	Soybean	mitochondrion	12.93	15.17
KRH73571	Soybean	nucleus	23.48	14.96
KRH45952	Soybean	mitochondrion	22.96	14.38
KRH14556	Soybean	cytosol	10.55	13.94
KRG99044	Soybean	mitochondrion	23.48	13.84
KRG90413	Soybean	plastid	23.75	12.23
KRH33703	Soybean	plastid	23.48	12.09
KRG96641	Soybean	nucleus	24.54	12.06
KRH68372	Soybean	nucleus	24.01	11.8
KRG91400	Soybean	nucleus	20.32	11.11
KRH35418	Soybean	endoplasmic reticulum	20.05	10.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0GJA7	EMBL:ACUP02008662	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_14G114900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlants:KRH15843	ProteinID:KRH15843	ProteinID:KRH15843.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	InterPro:RNA-helicase_DEAD-box_CS
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0006EDC162	:	:

Description

hypothetical protein

Coordinates

chr14:+:13635763..13649892

Molecular Weight (calculated)

42968.7 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.021

Length

379 amino acids

Sequence
(BLAST)

001: LPWMRHPVDI TRCQELPVCS VTLWQETVGP SDFERDLCIN SPTGRGKTLA YALPLHSKLV KRVFDALASL LGLRIGLAAG QSSLRHEFSS LIFLPREDDG
101: PNPGFLSSLW FQSKVNILVA TLGRLVDHVN KLSLKHLRYL VVDEADRFLH EDYQSWLPTV IKLTQFGLAK IVLFAMLTRG PGRLAQLILH YLLFLSAGKM
201: CYRLPEYLEC YKLICERKVK PLYLVALLKS LGEEKCIVFT RFVESTHHLC KLLNFFGDLK IGIKEFSGLK HQQVRSKTVG EFQRREFQVL VSSDAMTRVM
301: DVEGLRNVIN YDVPKYTKTY VHRPGRTARA GQTGCCFTLM SKDEVGGFEK LMKKAEASDC LQHTVPSSLI EALHSTYSS

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.