Factsheet for Os02t0795900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07679	Sorghum	nucleus	87.72	88.05
Zm00001d018375_P001	Maize	nucleus	85.99	85.66
TraesCS3A01G243600.1	Wheat	cytosol	34.93	83.49
TraesCS6A01G358500.1	Wheat	nucleus	84.26	83.46
TraesCS6D01G341300.1	Wheat	nucleus	83.88	83.08
TraesCS6B01G391200.1	Wheat	nucleus	83.69	82.89
TraesCS3D01G247800.1	Wheat	nucleus	68.91	78.21
HORVU6Hr1G085490.2	Barley	mitochondrion	83.3	75.61
GSMUA_Achr10P...	Banana	cytosol	67.18	68.36
PGSC0003DMT400059139	Potato	cytosol	62.96	63.94
Solyc07g005890.2.1	Tomato	nucleus	62.76	63.74
VIT_10s0003g04000.t01	Wine grape	nucleus	61.61	62.21
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	16.51	57.72
AT4G15850.1	Thale cress	nucleus	55.85	55.75
CDY44172	Canola	cytosol	55.66	54.61
Bra033519.1-P	Field mustard	cytosol	55.47	54.43
CDY22890	Canola	cytosol	55.47	54.43
KRH42587	Soybean	nucleus	31.86	54.07
KRH15843	Soybean	cytosol	38.39	52.77
KRH15837	Soybean	nucleus	18.04	50.27
KRH15846	Soybean	nucleus	44.91	41.94
KRH44787	Soybean	nucleus	48.94	41.33
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	57.97	39.32
Os07t0143700-01	Rice	plastid	14.01	22.19
Os12t0611200-01	Rice	nucleus	21.11	17.52
Os03t0827700-01	Rice	nucleus	24.18	17.43
Os09t0520700-01	Rice	nucleus, plastid	20.92	15.66

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4331005	EMBL:AK105305	ProteinID:BAD19076.1	ProteinID:BAD19277.1
ProteinID:BAF10300.1	ProteinID:BAS81361.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os02g0795900	EnsemblPlants:Os02t0795900-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	UniProt:Q0DWT8	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000DF08BF
RefSeq:XP_015627339.1	RefSeq:XP_015627340.1	RefSeq:XP_015627342.1	SEG:seg	:	:

Description

RNA helicase 1Similar to DEAD box-like RNA helicase (Fragment). (Os02t0795900-01)

Coordinates

chr2:-:33838855..33843632

Molecular Weight (calculated)

58384.9 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.285

Length

521 amino acids

Sequence
(BLAST)

001: MVVAMATKEE EGGPSSRVPH LPWMRNPVDI DSFSGCPVAH LPRLDPRLVK PLQRMGIESF FPVQVAAWLE TIGPGAFERD ICINSPTGSG KTLAYALPIV
101: QMLATRKVRC LRALVVLPTR DLALQVKEVF DAIAPVVGLS VGSAVGQSSI ADEVSNLIEK SKQGLFPSLD EEYIQMEPQT KVDILVATPG RLMDHISMTK
201: GFSLEHLQYL VVDETDRMLR EAYQSWLPTV IQLTRSSDQN HSWSDMNGET LLHPLTTIRR SGVERGFKGK SFPRLAKIVL SATLTQDPSK LSQLELQHPL
301: LLNSGKKRYR IPTKLQSYKL VCKSNLKPLS LIVLLQELRG EKCLVFTSSV ESSHRLSTLL EFFEDLPFKF SEYSRLQRES TRRKTLDAFK EGKIDVLIGT
401: DRMARGIHID GLRYVINYDM PPYVKTYIHR AGRTARAGES GSCFTFLRKH EVKAFDKMLK KADNSSCSLH SLPEESVETL RPVFSSALKK LEESLESEAT
501: KKSKSGDKAP NASKRKRTIN T

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.