CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15846	Soybean	nucleus	86.55	95.7
KRH15843	Soybean	cytosol	54.62	88.92
KRH42587	Soybean	nucleus	43.6	87.62
KRH15837	Soybean	nucleus	25.28	83.42
VIT_10s0003g04000.t01	Wine grape	nucleus	49.11	58.72
PGSC0003DMT400059139	Potato	cytosol	46.35	55.75
Solyc07g005890.2.1	Tomato	nucleus	46.35	55.75
TraesCS3A01G243600.1	Wheat	cytosol	19.12	54.13
AT4G15850.1	Thale cress	nucleus	45.06	53.26
GSMUA_Achr10P...	Banana	cytosol	44.08	53.12
CDY44172	Canola	cytosol	44.25	51.41
Bra033519.1-P	Field mustard	cytosol	43.92	51.04
CDY22890	Canola	cytosol	43.92	51.04
Os02t0795900-01	Rice	nucleus	41.33	48.94
EES07679	Sorghum	nucleus	41.0	48.75
TraesCS6A01G358500.1	Wheat	nucleus	41.17	48.29
Zm00001d018375_P001	Maize	nucleus	40.68	47.99
TraesCS6B01G391200.1	Wheat	nucleus	40.84	47.91
TraesCS6D01G341300.1	Wheat	nucleus	40.84	47.91
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	11.35	46.98
HORVU6Hr1G085490.2	Barley	mitochondrion	42.46	45.64
TraesCS3D01G247800.1	Wheat	nucleus	31.28	42.05
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	45.87	36.85
Zm00001d052036_P001	Maize	plastid	10.21	30.0
KRH14557	Soybean	mitochondrion	12.48	23.84
KRH73571	Soybean	nucleus	19.45	20.17
KRH45952	Soybean	mitochondrion	19.12	19.5
KRG99044	Soybean	mitochondrion	19.45	18.66
KRH33703	Soybean	plastid	20.26	16.98
KRG90413	Soybean	plastid	20.26	16.98
KRG96641	Soybean	nucleus	21.07	16.86
KRH68372	Soybean	nucleus	20.58	16.47
KRG91400	Soybean	nucleus	17.67	15.73
KRH35418	Soybean	endoplasmic reticulum	17.34	15.35
KRH14556	Soybean	cytosol	7.13	15.33

Protein Annotations

Gene3D:1.10.150.840	EntrezGene:100789424	Gene3D:3.30.70.330	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004958
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G231300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0046872
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR001650	InterPro:IPR012677
InterPro:IPR014001	UniProt:K7L8A6	EnsemblPlants:KRH44787	ProteinID:KRH44787	ProteinID:KRH44787.1	ProteinID:KRH44788.1
ProteinID:KRH44789.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:P-loop_NTPase	PFAM:PF00076	PFAM:PF00270	PFAM:PF00271
PFAM:PF00642	ScanProsite:PS00039	PFscan:PS50102	PFscan:PS50103	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RRM_dom	SMART:SM00356
SMART:SM00360	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	SUPFAM:SSF90229
UniParc:UPI000296B727	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:18968718..18976729

Molecular Weight (calculated)

69412.4 Da

IEP (calculated)

9.540

GRAVY (calculated)

-0.266

Length

617 amino acids

Sequence
(BLAST)

001: MNPPTLVKRT QNINAREAAL SIGDHASWHT KYKDSAYIFV GGIPFDLTEG DLLPVFAQYG EVVDVNLVRD KGTGKSKDFA FLAYEDQRSA DLAVDNLNGA
101: QVLGRIIKVD HVDKYKKKEE EDEETERLKR EARGVCRAFQ RGECTRGASC KFSHDEQACL IHIHAVLPWM RHPVDITRCP ELPVCSVPLM KRRLQSVLEE
201: NMGISKLFPV QVALWQETVG PGDFERDLCI NSPTGSGKTL AYALPIVQNL FTNPGGRLRA LVVVPTRDLA LQVKRVFDAL ASPLGLRIGL AAGQSSLRHE
301: LSSLIYLPGE DDGPDPGFLS PLWFQSKVDI LVATPGRLVD HVNKLSLKHL RYLVVDEADR LLREDYQSWL PTVLKLTQSR LAKIVLSATL TRDPGRLAQL
401: NLHHPLFLSA GKMRYRLPEY LECYKLICER KVKPLYLVAL LKSLGEEKCI VFTRSVESTH HLCKLLNCFG DLKIGIKEFS GLKHQRVRSK TVGEFRRGEF
501: QVLVSSDAMT RGMDVEGVRN VINYDMPKYT KTYVHRAGRT ARAGQTGRCF TLMSKDEVGG FKKLMKKAEA SDCLEYTVPS SLIEALHSTY QSALTKLKEK
601: ILESRRKPRI SLVNRSK

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.