Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY22890 | Canola | cytosol | 97.36 | 97.36 |
AT4G15850.1 | Thale cress | nucleus | 80.98 | 82.38 |
VIT_10s0003g04000.t01 | Wine grape | nucleus | 63.09 | 64.92 |
Solyc07g005890.2.1 | Tomato | nucleus | 62.15 | 64.33 |
PGSC0003DMT400059139 | Potato | cytosol | 61.58 | 63.74 |
TraesCS3A01G243600.1 | Wheat | cytosol | 25.61 | 62.39 |
GSMUA_Achr10P... | Banana | cytosol | 59.13 | 61.33 |
KRH42587 | Soybean | nucleus | 33.71 | 58.31 |
EES07679 | Sorghum | nucleus | 54.99 | 56.26 |
Os02t0795900-01 | Rice | nucleus | 54.61 | 55.66 |
TraesCS6A01G358500.1 | Wheat | nucleus | 54.8 | 55.32 |
TraesCS6B01G391200.1 | Wheat | nucleus | 54.61 | 55.13 |
TraesCS6D01G341300.1 | Wheat | nucleus | 54.43 | 54.94 |
KRH15843 | Soybean | cytosol | 39.17 | 54.88 |
Zm00001d018375_P001 | Maize | nucleus | 53.67 | 54.49 |
KRH15837 | Soybean | nucleus | 18.08 | 51.34 |
HORVU6Hr1G085490.2 | Barley | mitochondrion | 55.18 | 51.05 |
TraesCS3D01G247800.1 | Wheat | nucleus | 42.56 | 49.24 |
HORVU0Hr1G031660.1 | Barley | mitochondrion, nucleus | 12.99 | 46.31 |
KRH15846 | Soybean | nucleus | 48.02 | 45.7 |
KRH44787 | Soybean | nucleus | 51.41 | 44.25 |
PGSC0003DMT400029130 | Potato | cytosol, nucleus, plasma membrane, plastid | 61.21 | 42.32 |
Zm00001d052036_P001 | Maize | plastid | 14.31 | 36.19 |
CDY37406 | Canola | mitochondrion | 22.03 | 22.94 |
CDY28363 | Canola | plastid | 11.3 | 21.9 |
CDY46329 | Canola | mitochondrion | 21.85 | 21.13 |
CDY10634 | Canola | mitochondrion | 22.03 | 19.44 |
CDY37408 | Canola | mitochondrion | 21.85 | 19.3 |
CDY46330 | Canola | nucleus | 10.36 | 18.84 |
CDY05524 | Canola | plastid | 26.18 | 18.83 |
CDX80564 | Canola | plastid | 25.8 | 18.82 |
CDX87045 | Canola | plastid | 26.37 | 18.77 |
CDY66725 | Canola | plastid | 25.99 | 18.57 |
CDY61108 | Canola | plastid | 26.18 | 18.53 |
CDY19766 | Canola | plastid | 26.55 | 18.53 |
CDY16789 | Canola | nucleus | 20.72 | 17.32 |
CDX87236 | Canola | nucleus | 20.72 | 17.27 |
CDY34116 | Canola | cytosol | 8.85 | 9.22 |
CDY44622 | Canola | cytosol | 9.6 | 5.9 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078I297 | UniProt:A0A078I297 | EnsemblPlants:CDY44172 | ProteinID:CDY44172 |
ProteinID:CDY44172.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006605 | GO:GO:0006810 |
GO:GO:0006886 | GO:GO:0008150 | EnsemblPlantsGene:GSBRNA2T00079649001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PRINTS:PR00906 |
PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF68 | InterPro:RNA_helicase_DEAD_Q_motif |
SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | InterPro:SecA | UniParc:UPI0004EB91AB | SEG:seg |
Description
BnaC01g22220DBnaC01g22220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I297]
Coordinates
chrLK032581:-:160843..163966
Molecular Weight (calculated)
58237.6 Da
IEP (calculated)
9.398
GRAVY (calculated)
-0.159
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEEKDGQA QAQEETTNLV VPWMRAPVDV SHVDSCSLET LPSLHPRLKE ALEKMGISSL FPVQVAVWHE TIGPGGFERD VCVNSPTGSG KTLSYALPIV
101: QTLSSRAVRC LRALVVLPTR DLALQVKGVF DAIAPSVGLS VGSAVGQSSI AGDIAQLIKT PKLDAGICYD PEDISQNLES SAVDILVATP GRLMDHINNT
201: KGFTLEHLRY LVVDETDRLL RESYQEWLPT VLKLTQASDD GPFPSSSPFV PSSFGSLLTI RRQSVERGFK GKPYPRLAKL ALSATLTQDP SKLIQLDLHH
301: PLFMTTGATR YRLPEKLECL RLICETGVKP VYLVGLLKSL EGEKCIVFTS SVETTRRLCK LLNFFGDSMI KAKEYSGGLN QAVRSKELKA FRKGDIQVLI
401: SSDALARGMD VELVTNVINY DMPQYPKTFI HRAGRTARAG RAGRCFTLLG DHEVRRFSNL LKKVGNASCP IYPIPPDLFG PVRAIYEPAL AKLKESVEPI
501: APKRGRQVGF KHNSKTTNSQ TKRNKATSGQ A
101: QTLSSRAVRC LRALVVLPTR DLALQVKGVF DAIAPSVGLS VGSAVGQSSI AGDIAQLIKT PKLDAGICYD PEDISQNLES SAVDILVATP GRLMDHINNT
201: KGFTLEHLRY LVVDETDRLL RESYQEWLPT VLKLTQASDD GPFPSSSPFV PSSFGSLLTI RRQSVERGFK GKPYPRLAKL ALSATLTQDP SKLIQLDLHH
301: PLFMTTGATR YRLPEKLECL RLICETGVKP VYLVGLLKSL EGEKCIVFTS SVETTRRLCK LLNFFGDSMI KAKEYSGGLN QAVRSKELKA FRKGDIQVLI
401: SSDALARGMD VELVTNVINY DMPQYPKTFI HRAGRTARAG RAGRCFTLLG DHEVRRFSNL LKKVGNASCP IYPIPPDLFG PVRAIYEPAL AKLKESVEPI
501: APKRGRQVGF KHNSKTTNSQ TKRNKATSGQ A
001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
Arabidopsis Description
RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.