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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22890 Canola cytosol 97.36 97.36
AT4G15850.1 Thale cress nucleus 80.98 82.38
VIT_10s0003g04000.t01 Wine grape nucleus 63.09 64.92
Solyc07g005890.2.1 Tomato nucleus 62.15 64.33
PGSC0003DMT400059139 Potato cytosol 61.58 63.74
TraesCS3A01G243600.1 Wheat cytosol 25.61 62.39
GSMUA_Achr10P... Banana cytosol 59.13 61.33
KRH42587 Soybean nucleus 33.71 58.31
EES07679 Sorghum nucleus 54.99 56.26
Os02t0795900-01 Rice nucleus 54.61 55.66
TraesCS6A01G358500.1 Wheat nucleus 54.8 55.32
TraesCS6B01G391200.1 Wheat nucleus 54.61 55.13
TraesCS6D01G341300.1 Wheat nucleus 54.43 54.94
KRH15843 Soybean cytosol 39.17 54.88
Zm00001d018375_P001 Maize nucleus 53.67 54.49
KRH15837 Soybean nucleus 18.08 51.34
HORVU6Hr1G085490.2 Barley mitochondrion 55.18 51.05
TraesCS3D01G247800.1 Wheat nucleus 42.56 49.24
HORVU0Hr1G031660.1 Barley mitochondrion, nucleus 12.99 46.31
KRH15846 Soybean nucleus 48.02 45.7
KRH44787 Soybean nucleus 51.41 44.25
PGSC0003DMT400029130 Potato cytosol, nucleus, plasma membrane, plastid 61.21 42.32
Zm00001d052036_P001 Maize plastid 14.31 36.19
CDY37406 Canola mitochondrion 22.03 22.94
CDY28363 Canola plastid 11.3 21.9
CDY46329 Canola mitochondrion 21.85 21.13
CDY10634 Canola mitochondrion 22.03 19.44
CDY37408 Canola mitochondrion 21.85 19.3
CDY46330 Canola nucleus 10.36 18.84
CDY05524 Canola plastid 26.18 18.83
CDX80564 Canola plastid 25.8 18.82
CDX87045 Canola plastid 26.37 18.77
CDY66725 Canola plastid 25.99 18.57
CDY61108 Canola plastid 26.18 18.53
CDY19766 Canola plastid 26.55 18.53
CDY16789 Canola nucleus 20.72 17.32
CDX87236 Canola nucleus 20.72 17.27
CDY34116 Canola cytosol 8.85 9.22
CDY44622 Canola cytosol 9.6 5.9
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078I297UniProt:A0A078I297EnsemblPlants:CDY44172ProteinID:CDY44172
ProteinID:CDY44172.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006605GO:GO:0006810
GO:GO:0006886GO:GO:0008150EnsemblPlantsGene:GSBRNA2T00079649001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650
InterPro:IPR014001InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PRINTS:PR00906
PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF68InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487SMART:SM00490SUPFAM:SSF52540InterPro:SecAUniParc:UPI0004EB91ABSEG:seg
Description
BnaC01g22220DBnaC01g22220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I297]
Coordinates
chrLK032581:-:160843..163966
Molecular Weight (calculated)
58237.6 Da
IEP (calculated)
9.398
GRAVY (calculated)
-0.159
Length
531 amino acids
Sequence
(BLAST)
001: MVVEEKDGQA QAQEETTNLV VPWMRAPVDV SHVDSCSLET LPSLHPRLKE ALEKMGISSL FPVQVAVWHE TIGPGGFERD VCVNSPTGSG KTLSYALPIV
101: QTLSSRAVRC LRALVVLPTR DLALQVKGVF DAIAPSVGLS VGSAVGQSSI AGDIAQLIKT PKLDAGICYD PEDISQNLES SAVDILVATP GRLMDHINNT
201: KGFTLEHLRY LVVDETDRLL RESYQEWLPT VLKLTQASDD GPFPSSSPFV PSSFGSLLTI RRQSVERGFK GKPYPRLAKL ALSATLTQDP SKLIQLDLHH
301: PLFMTTGATR YRLPEKLECL RLICETGVKP VYLVGLLKSL EGEKCIVFTS SVETTRRLCK LLNFFGDSMI KAKEYSGGLN QAVRSKELKA FRKGDIQVLI
401: SSDALARGMD VELVTNVINY DMPQYPKTFI HRAGRTARAG RAGRCFTLLG DHEVRRFSNL LKKVGNASCP IYPIPPDLFG PVRAIYEPAL AKLKESVEPI
501: APKRGRQVGF KHNSKTTNSQ TKRNKATSGQ A
Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)
001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
Arabidopsis Description
RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.