CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10512
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	CDY10512	AT1G53720.1	16497658
AT5G62190.1	CDY72459	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28363	Canola	plastid	38.63	71.9
CDY44622	Canola	cytosol	73.33	43.29
CDX87236	Canola	nucleus	39.41	31.55
CDY16789	Canola	nucleus	39.02	31.34
Bra029275.1-P	Field mustard	nucleus	40.0	30.96
AT5G62190.1	Thale cress	nucleus	37.45	28.46
GSMUA_Achr7P05930_001	Banana	nucleus	30.98	26.03
Solyc06g035450.2.1	Tomato	nucleus	19.61	24.94
VIT_16s0022g02110.t01	Wine grape	plastid	33.73	24.78
KRG91400	Soybean	nucleus	33.14	24.39
PGSC0003DMT400079640	Potato	nucleus	32.16	24.33
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	31.57	24.07
Solyc03g007010.2.1	Tomato	nucleus	31.96	23.9
KRH35418	Soybean	endoplasmic reticulum	32.35	23.67
HORVU5Hr1G080170.2	Barley	nucleus	28.63	22.53
GSMUA_Achr4P19590_001	Banana	nucleus	30.0	21.25
Zm00001d006160_P001	Maize	nucleus	29.22	21.16
Zm00001d035226_P001	Maize	plasma membrane	14.31	20.98
TraesCS5A01G308900.1	Wheat	nucleus	28.43	20.74
Os09t0520700-01	Rice	nucleus, plastid	28.24	20.69
Zm00001d021196_P004	Maize	nucleus	28.63	20.65
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	28.24	20.57
TraesCS5B01G309500.1	Wheat	nucleus	28.24	20.57
EER97062	Sorghum	nucleus	28.63	20.53
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	9.61	19.6
Zm00001d050438_P002	Maize	extracellular	12.35	19.57
Zm00001d049254_P001	Maize	cytosol	7.25	19.37
Zm00001d046048_P001	Maize	cytosol	7.06	19.15
CDY46330	Canola	nucleus	9.8	17.12
Zm00001d049075_P001	Maize	extracellular, golgi	15.49	16.32
Zm00001d024138_P001	Maize	plastid	8.82	15.96
Zm00001d035797_P001	Maize	mitochondrion	16.67	14.91
CDY46329	Canola	mitochondrion	15.29	14.21
CDY37406	Canola	mitochondrion	14.12	14.12
CDX80564	Canola	plastid	19.61	13.74
CDY66725	Canola	plastid	19.8	13.59
CDY05524	Canola	plastid	19.61	13.55
CDX87045	Canola	plastid	19.61	13.4
CDY61108	Canola	plastid	19.61	13.33
CDY19766	Canola	plastid	19.61	13.14
CDY37408	Canola	mitochondrion	15.29	12.98
CDY10634	Canola	mitochondrion	15.29	12.96
CDY44172	Canola	cytosol	9.22	8.85
CDY22890	Canola	cytosol	9.02	8.66

Protein Annotations

EnsemblPlants:CDY34116	EnsemblPlantsGene:GSBRNA2T00056060001	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR24031
PANTHER:PTHR24031:SF327	ProteinID:CDY34116	ProteinID:CDY34116.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EE8560
UniProt:A0A078H8J6	MapMan:35.1	:	:	:	:

Description

BnaC01g28560DBnaC01g28560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8J6]

Coordinates

chrLK032329:+:87086..88807

Molecular Weight (calculated)

45227.3 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.354

Length

510 amino acids

Sequence
(BLAST)

001: MKLSVEDVKI NNSNAVLKFK ITDPLREKLQ ATTSEMILGG ADLVGRARTG QGKKLVLEIK LKRGADIVVG TPGRIKDHTE RHNIATRFLK QDKKTIDLVG
101: NDKIKASNSV RPIALPCNKQ SMSRLIPYTI SLYSSGGSKI CFTKTKDQAS QFSGLLPGAR ALHGDIQQSQ RKITLVGFRK GQTGVAIMLY GSRKSGLSSI
201: EKQTGKRFEH VSAPQPNDIA KAVGMEAAEK IIQVCDGVVP AFMTAAEEVA DEYGEGDKLL RNCFLRQMVK ENDGNSKTQV IGESEIESFE KDEDLVLDQK
301: DFETLYHHEE KSAGDIIMGQ SRISEDSAEK NNEDRMKIGQ SCVEYENLES FLKLPLEDPC ILAHKENESL RIVWRTLXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL QEIWLLVAVH GSTNSQTATK
501: NGVIRYPSFS

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.