CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69166
CDX75527
CDX79732
CDX81436
CDX84503
CDX87236
CDX95008
CDY07084
CDY08876
CDY16789
CDY22958
CDY24176
CDY28363
CDY34116
CDY43799
CDY44622
CDY46773
CDY47646
CDY59084
CDY66028
CDY71816

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	CDX95008	AT1G09140.1	16497658
AT1G53720.1	CDY66028	AT1G09140.1	16497658
AT1G53720.1	CDY47646	AT1G23860.1	16497658
AT1G53720.1	CDY59084	AT1G23860.1	16497658
AT1G53720.1	CDX79732	AT2G37340.1	16497658
AT1G53720.1	CDY46773	AT2G37340.1	16497658
AT1G53720.1	CDY07084	AT3G13570.1	16497658
AT1G53720.1	CDY24176	AT3G13570.1	16497658
AT1G53720.1	CDX81436	AT3G61860.1	16497658
AT1G53720.1	CDY22958	AT3G61860.1	16497658
AT1G53720.1	CDX69166	AT4G35800.1	16497658
AT1G53720.1	CDX75527	AT4G35800.1	16497658
AT1G53720.1	CDY08876	AT4G35800.1	16497658
AT1G53720.1	CDY71816	AT4G35800.1	16497658
AT1G53720.1	CDX87236	AT5G62190.1	16497658
AT1G53720.1	CDY16789	AT5G62190.1	16497658
AT1G53720.1	CDY28363	AT5G62190.1	16497658
AT1G53720.1	CDY34116	AT5G62190.1	16497658
AT1G53720.1	CDY44622	AT5G62190.1	16497658
AT1G53720.1	CDX84503	AT5G64200.2	16497658
AT1G53720.1	CDY43799	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030819.1-P	Field mustard	cytosol	52.72	96.14
AT1G53720.1	Thale cress	nucleus	42.94	84.19
PGSC0003DMT400056014	Potato	cytosol	13.21	72.78
PGSC0003DMT400011164	Potato	cytosol	12.6	67.57
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	13.31	64.08
PGSC0003DMT400011166	Potato	nucleus	18.45	62.67
HORVU1Hr1G015670.5	Barley	cytosol	15.12	61.98
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	5.85	61.7
PGSC0003DMT400069100	Potato	cytosol	21.27	61.52
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	14.92	61.41
TraesCS3D01G065600.1	Wheat	cytosol	20.46	60.78
Zm00001d036620_P001	Maize	nucleus	27.12	60.18
Solyc07g066420.2.1	Tomato	nucleus	35.58	60.14
CDY72459	Canola	cytosol, extracellular, plastid	6.75	57.27
VIT_19s0027g01660.t01	Wine grape	nucleus	36.69	57.05
KRG93223	Soybean	nucleus	36.79	57.03
KRH13056	Soybean	nucleus	36.09	56.56
TraesCS7D01G457200.1	Wheat	nucleus	31.65	56.17
TraesCS3A01G064900.1	Wheat	cytosol	22.88	56.05
GSMUA_Achr10P...	Banana	cytosol	31.25	55.96
TraesCS7B01G371900.1	Wheat	nucleus	31.45	55.81
TraesCS7A01G469800.1	Wheat	nucleus	31.45	55.81
HORVU7Hr1G107520.5	Barley	nucleus	31.45	55.81
TraesCS4A01G064400.1	Wheat	nucleus	26.81	55.65
EER88795	Sorghum	cytosol	31.15	55.28
TraesCS4D01G241400.1	Wheat	nucleus	26.71	55.09
Os06t0670500-01	Rice	cytosol	31.15	54.79
TraesCS4B01G241800.1	Wheat	nucleus	25.6	54.51
Os06t0670400-00	Rice	cytosol	24.8	52.45
CDX84155	Canola	cytosol	6.85	41.46
CDX75068	Canola	cytosol	6.85	41.46
CDY38037	Canola	mitochondrion, plastid	6.65	34.2
CDX68936	Canola	nucleus	9.78	20.77
CDX75321	Canola	nucleus	10.08	20.33
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	3.83	16.24
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	3.83	16.24
CDX83335	Canola	mitochondrion, plastid	3.53	15.15
CDY36499	Canola	cytosol	7.96	13.23
CDY08725	Canola	cytosol	7.86	13.07
CDY08708	Canola	cytosol	6.75	10.77
CDX99192	Canola	cytosol	6.75	10.77
CDY69933	Canola	cytosol, nucleus	2.12	9.91

Protein Annotations

MapMan:12.4.4.4	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	GO:A0A078FC17	UniProt:A0A078FC17
InterPro:Actin	EnsemblPlants:CDY10512	ProteinID:CDY10512	ProteinID:CDY10512.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00032462001
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR002130	InterPro:IPR012677	InterPro:IPR029000	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00022	PFAM:PF00076	PFAM:PF00098	PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00268	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF53067	SUPFAM:SSF54928	UniParc:UPI0004EF49A2
InterPro:Znf_CCHC	SEG:seg	:	:	:	:

Description

BnaC03g71020DBnaC03g71020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC17]

Coordinates

chrLK032004:-:70535..75796

Molecular Weight (calculated)

112573.0 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.691

Length

992 amino acids

Sequence
(BLAST)

001: MSVLIVTSLG DIVIDLHSTK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG LGGDSIYKFL YGEQARFFRD EIHLDLKHSK TGTVSMASAG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGEIA EGLDTLTRIN EAYVDAKNRP YKNIRIKHTY ILEDPFEDPT QLADMIPDAS PEGNPKEEVE VDVRLEDDWV
201: PLDEQLGADE LEEIIRAKAA HSSAVVLESI GDIPEAEVKP PENVLFVCKL NPVTEDEDLH TIFSRFGTVI SADVIRDFKT GDSLCYAFIE FEEKAACEQA
301: YNKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH VAKDCVGGGN QASKFIVKDQ NRQHGGGEGY DMVFEGDIAE RPKREKSHDK
401: DKIRRRSPGG YGEGKKQDRD EGRSPGGYDE GKRRDKDEGR SGRVYGEGKR RDRDEGDTED KAASKYDGRR DHREDVRERD RRYDDGVSRE KKHRERNERE
501: SREDEERRRR RRHEEMRDDR WSDKGRRRER RDRKPTNKLL TRNGLLQQNQ VTTIEEETNH LRRREMSNNI VVLDNGGGLI KAGQGGERDP LVVIPNCLFK
601: PLSSKKFIFP PPLSDADVDI DLTSAAVRRP IDRGYLINPD LQRDIWSHLF TSLLRITPTS SSLLLTEPPL SIPSVQRATD ELVFEDFGFS SLYVANPQSL
701: VHLYEASRQP GSILSRTQCS LVVDCGFSFT HAVPVLHNFT LNYAVKRIDL GGKAFTNYLK ELVSYRSINV MDQTFLMDDA KEKLCFVSLD LHRDLNLARE
801: RRTGNVLKST YVLPDGVTHT KGYLKDPQSA NNFLTLGLSD EGPNSVMDKV DGEKKKADMN KNEIDLTNER FLVPETLFHP ADLGMNQAGI AECIVRAVSS
901: CHSYLQPVLY QSIILTGGST LFPQLKERLE RELRPLVPDH FDVKITTQED PILGVWRGGS LLASSPDFES MCVTKAEYEE LGSARCRRRF FH

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.