CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, nucleus
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72459	Canola	cytosol, extracellular, plastid	50.0	40.17
Solyc12g089200.1.1	Tomato	nucleus	18.09	22.67
CDX75068	Canola	cytosol	32.98	18.9
CDX84155	Canola	cytosol	32.98	18.9
CDY38037	Canola	mitochondrion, plastid	34.04	16.58
CDX83335	Canola	mitochondrion, plastid	17.02	6.93
CDX68936	Canola	nucleus	34.04	6.85
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	17.02	6.84
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	17.02	6.84
CDX75321	Canola	nucleus	34.04	6.5
CDX99192	Canola	cytosol	40.43	6.11
CDY08708	Canola	cytosol	40.43	6.11
CDY10512	Canola	nucleus	61.7	5.85
CDY08725	Canola	cytosol	35.11	5.53
CDY36499	Canola	cytosol	35.11	5.53
CDY69933	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078GZR6	UniProt:A0A078GZR6	EnsemblPlants:CDY30664	ProteinID:CDY30664
ProteinID:CDY30664.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00045984001	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF156	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0004EDBEEE	SEG:seg	:

Description

BnaC06g10280DBnaC06g10280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZR6]

Coordinates

chrLK032257:-:236461..236826

Molecular Weight (calculated)

10458.8 Da

IEP (calculated)

7.241

GRAVY (calculated)

0.676

Length

94 amino acids

Sequence
(BLAST)

1: MSVIIGTTVG DLLIDLFIEK CPKTCLNFLK LCKIKYYHNS LFHTVNKDSI AVTGDPTGTG TGGDSIFQVL SLLFCFFLSS FSIFLSTYFS CYVF

Best Arabidopsis Sequence Match ( AT1G53720.2 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGK SFFFSPPYGI SDLL

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.