CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
mitochondrion 4
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	98.29	98.29
Bra029595.1-P	Field mustard	mitochondrion, plastid	94.02	93.22
AT3G66654.3	Thale cress	plastid	88.03	87.29
GSMUA_Achr5P15930_001	Banana	mitochondrion	60.68	60.68
KRH49483	Soybean	mitochondrion	56.84	59.11
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.97	58.97
Zm00001d021332_P002	Maize	mitochondrion	58.55	58.8
KXG36207	Sorghum	mitochondrion	58.55	58.8
KRG89165	Soybean	endoplasmic reticulum	57.69	58.7
KRH34786	Soybean	endoplasmic reticulum	57.69	58.19
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	69.23	57.24
Solyc09g008410.2.1	Tomato	plastid	56.84	56.36
PGSC0003DMT400009946	Potato	mitochondrion	55.98	55.51
Solyc10g083930.1.1	Tomato	nucleus	53.85	54.78
Os07t0476500-01	Rice	mitochondrion	54.7	54.47
PGSC0003DMT400072698	Potato	mitochondrion, plastid	53.42	54.35
TraesCS2B01G255000.1	Wheat	mitochondrion	53.85	54.08
TraesCS2D01G237600.1	Wheat	mitochondrion	52.56	52.79
CDX83335	Canola	mitochondrion, plastid	46.58	47.19
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	58.12	46.58
HORVU2Hr1G054470.1	Barley	plastid	42.31	38.82
CDX75068	Canola	cytosol	17.09	24.39
CDX84155	Canola	cytosol	17.09	24.39
CDY38037	Canola	mitochondrion, plastid	18.38	22.28
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	6.84	17.02
CDY72459	Canola	cytosol, extracellular, plastid	8.12	16.24
CDX99192	Canola	cytosol	26.5	9.97
CDY08708	Canola	cytosol	26.5	9.97
CDY36499	Canola	cytosol	20.51	8.04
CDY08725	Canola	cytosol	20.51	8.04
CDX68936	Canola	nucleus	15.81	7.92
CDX75321	Canola	nucleus	15.81	7.52
CDY10512	Canola	nucleus	16.24	3.83
CDY69933	Canola	cytosol, nucleus	0.85	0.94

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078GDS3	UniProt:A0A078GDS3	EnsemblPlants:CDY24675	ProteinID:CDY24675
ProteinID:CDY24675.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00027053001
InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0004EED976	SEG:seg

Description

BnaA05g30740DPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078GDS3]

Coordinates

chrLK032162:-:293670..295743

Molecular Weight (calculated)

26265.6 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.359

Length

234 amino acids

Sequence
(BLAST)

001: MARIKPQALL NQSKKKKGPS RISISTIVVC NLVVAVVVLS LVTTYRHWSQ RSRNTLETQS HSFEDTNAVS QQKNYDLPGY ADINTSKGLI AVELFKDASP
101: EAVDKFLDLC QKDHFKGMPF HRVIKNYLVQ AGHSSSSIPI EEWTAKGKLR GRLDTSPKHE AFMLGTPKNK GNNKDFELLI TTAPIPDLND QLIVFGRVLK
201: GEDVVQEIEE VDTDEHFQPK SQIGIISIVL KREL

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.