Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75321 | Canola | nucleus | 93.87 | 40.45 |
| CDX68936 | Canola | nucleus | 76.89 | 34.9 |
| CDY10512 | Canola | nucleus | 9.91 | 2.12 |
| CDY08725 | Canola | cytosol | 4.25 | 1.51 |
| CDY36499 | Canola | cytosol | 4.25 | 1.51 |
| CDY05284 | Canola | endoplasmic reticulum, mitochondrion, plastid | 0.94 | 0.85 |
| CDY24675 | Canola | endoplasmic reticulum, mitochondrion, plastid | 0.94 | 0.85 |
| CDY38037 | Canola | mitochondrion, plastid | 0.47 | 0.52 |
| CDX83335 | Canola | mitochondrion, plastid | 0.47 | 0.43 |
| CDX75068 | Canola | cytosol | 0.0 | 0.0 |
| CDX84155 | Canola | cytosol | 0.0 | 0.0 |
| CDX99192 | Canola | cytosol | 0.0 | 0.0 |
| CDY08708 | Canola | cytosol | 0.0 | 0.0 |
| CDY30664 | Canola | endoplasmic reticulum, extracellular, nucleus | 0.0 | 0.0 |
| CDY72459 | Canola | cytosol, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY69933 | EnsemblPlantsGene:GSBRNA2T00093654001 | ProteinID:CDY69933 | ProteinID:CDY69933.1 | SEG:seg | UniParc:UPI0004EEB198 |
| UniProt:A0A078JQS0 | MapMan:35.1 | : | : | : | : |
Description
BnaAnng32060DBnaAnng32060D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQS0]
Coordinates
chrLK040711:+:1..1616
Molecular Weight (calculated)
24477.8 Da
IEP (calculated)
9.803
GRAVY (calculated)
-1.317
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: GHSDDDDDDG DETKFDAKMR NQVLSRRKEM GDIPPKPTQK KSNYHWLTSY YAIYRSDVSS SEDEKPKMEK LSLKKKGIGS EAKAERLENG DADLQLYNAS
101: ERARQLHKLK KRRMQGNEDA VLAKLEKFKQ SISAKPFGSS SEPVDNMEED VSDWKKVKLK FAPEHGKDKM RKEDPDAYVV VDPLLEKGKE KFNRIQAKQK
201: RREREWSGKS LA
101: ERARQLHKLK KRRMQGNEDA VLAKLEKFKQ SISAKPFGSS SEPVDNMEED VSDWKKVKLK FAPEHGKDKM RKEDPDAYVV VDPLLEKGKE KFNRIQAKQK
201: RREREWSGKS LA
001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA
Arabidopsis Description
CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.