CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G47320.1	Thale cress	golgi, mitochondrion	83.12	83.48
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	47.62	47.01
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	47.19	46.58
CDX75068	Canola	cytosol	16.02	22.56
CDX84155	Canola	cytosol	16.02	22.56
CDY38037	Canola	mitochondrion, plastid	18.18	21.76
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	6.93	17.02
CDY72459	Canola	cytosol, extracellular, plastid	6.49	12.82
CDX99192	Canola	cytosol	26.84	9.97
CDY08708	Canola	cytosol	26.84	9.97
CDY36499	Canola	cytosol	22.51	8.71
CDY08725	Canola	cytosol	22.08	8.54
CDX68936	Canola	nucleus	16.02	7.92
CDX75321	Canola	nucleus	16.02	7.52
CDY10512	Canola	nucleus	15.15	3.53
CDY69933	Canola	cytosol, nucleus	0.43	0.47

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078D2I1	EnsemblPlants:CDX83335	ProteinID:CDX83335	ProteinID:CDX83335.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00138897001
InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0004EE1104	SEG:seg

Description

BnaA03g21710D

Coordinates

chrLK031832:-:1096321..1097831

Molecular Weight (calculated)

25896.3 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.149

Length

231 amino acids

Sequence
(BLAST)

001: MAKIKPQALL QQSKKKKGPA PISITSIVIY TLAVLLVVFV LFSAYKRWTL RSEIPTHNGR SLLQDPAFPG VKKNTNLPWF ATLDTGKGSV TIQLFKDAAP
101: NVVDEFINLS QDGYFKGFSF SRVVKHAVIQ AGHSAQFDAV KDWALQRNNL HTSLKQEEYM VGTPKAKNEQ GGFEFFIVSS QITDLNEKLT VFGRVVKGQD
201: VVKEIEEVEI DEHYQPKAPI EIMSVTLLQD M

Best Arabidopsis Sequence Match ( AT2G47320.1 )
(BLAST)

001: MAKIKPQALL QQSKKKKGPS RISITNIVIY TLAVLLLVFV LFSAYRRWTH RSEIPTHNGR SVLEDAAFPG MKNVDLPRFA TLDTGKGSVT IELFKDTAPN
101: VVDQFMKFCQ DGYFKGFLFS RVVKHFVIQA GDSAEFDAVK DWALDRKNID TSLKHEEFMV GTPKAKNEQG GFEFFIVSAQ IKDLNEKLTV FGRVSKGQDV
201: VQEIEEVETD DQYQPKSPIE IMSVTLLQDM

Arabidopsis Description

CYP21-3Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94A16]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.