CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019430.1-P	Field mustard	cytosol	99.68	99.68
CDX99192	Canola	cytosol	99.52	99.52
AT3G44600.1	Thale cress	cytosol	92.93	91.6
KRH22711	Soybean	nucleus	85.05	85.88
KRH26593	Soybean	nucleus	84.41	85.23
Solyc11g067090.1.1	Tomato	cytosol, nucleus	82.8	82.8
PGSC0003DMT400019171	Potato	cytosol	82.48	82.61
GSMUA_Achr1P17040_001	Banana	cytosol	81.51	80.99
VIT_06s0061g01590.t01	Wine grape	cytosol	75.24	78.79
TraesCS7A01G277700.1	Wheat	cytosol	80.39	77.16
TraesCS7D01G277600.1	Wheat	nucleus	80.06	76.85
TraesCS7B01G175400.1	Wheat	cytosol	80.06	76.85
OQU80719	Sorghum	cytosol	79.9	76.82
Zm00001d049958_P002	Maize	cytosol	79.58	73.77
HORVU7Hr1G058730.3	Barley	cytosol, mitochondrion, nucleus	79.9	73.41
CDX84155	Canola	cytosol	13.34	50.61
CDX75068	Canola	cytosol	13.34	50.61
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	6.11	40.43
CDY38037	Canola	mitochondrion, plastid	11.74	37.82
CDY72459	Canola	cytosol, extracellular, plastid	5.14	27.35
CDX83335	Canola	mitochondrion, plastid	9.97	26.84
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	9.97	26.5
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	9.97	26.5
CDY36499	Canola	cytosol	20.74	21.61
CDY08725	Canola	cytosol	20.42	21.27
CDX68936	Canola	nucleus	12.86	17.13
CDX75321	Canola	nucleus	12.86	16.26
CDY10512	Canola	nucleus	10.77	6.75
CDY69933	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.130.10.10	Gene3D:2.40.100.10	GO:A0A078FA89	UniProt:A0A078FA89	EnsemblPlants:CDY08708
ProteinID:CDY08708	ProteinID:CDY08708.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00000629001
InterPro:IPR001680	InterPro:IPR002130	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR029000	PFAM:PF00160
PFAM:PF00400	PRINTS:PR00153	PFscan:PS50072	PFscan:PS50294	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213
SMART:SM00320	SUPFAM:SSF50891	SUPFAM:SSF50978	UniParc:UPI0004EE29D3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC03g54740DBnaC03g54740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA89]

Coordinates

chrLK031988:-:884097..887763

Molecular Weight (calculated)

70085.3 Da

IEP (calculated)

6.428

GRAVY (calculated)

-0.441

Length

622 amino acids

Sequence
(BLAST)

001: MEEEPKNGSA KELAVVEEEE PMVGPGPAPR VKRKRPLQFE QAYLDSLPCA NMYEKSYMHR DVVTHVAVSA ADFFITGSID GHLKFWKKKG VGIEFAKHFR
101: SHLGPIEGLA VSVDGLLCCT ISNDDHAVKI YDVVNYDMMA MIRLPYIPGA VEWVYTHADV KAKLAVSDRN SSFVHIYDPR SGSNEPIASK QIHSYPVKVM
201: KYNPVSDTVI SGDTKGIIEY WSPATLQFPE DEVDFKLKSD TNLFEIIKCK TTISAIEVSP DGRQFSVTSP DRRIRVFWFE TGKLRRVYDE SLEVAQDLQR
301: SDAPLYRLEA IDFGRRMAVE KELEKTESAP QPNAVFDESS NFLIFATLLG IKIVNLQTNT VARILGKVES NERYLRVALY QGDQGGKKVR KIPAAAANVN
401: ESKEPLTDPT ILCCAFKKHR IYMFSRREPE EPEDASQGRD VFNEKPSADE LMSVSDIGNS STTSLPENVI MHTTMGDMHI KLYPEECPKT VENFTTHCRN
501: GYYDNHLFHR VIKGFMVQTG DPLGDGTGGQ SIWGREFEDE FHKSLRHDRP FTVSMANAGQ NTNGSQFFIT TVATPWLDNK HTVFGRVVKG MDVVQGIEKV
601: KTDKNDRPYQ DVKILNVTVP KS

Best Arabidopsis Sequence Match ( AT3G44600.1 )
(BLAST)

001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S

Arabidopsis Description

CYP71Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.