Factsheet for VIT_06s0061g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22711	Soybean	nucleus	84.51	81.49
KRH26593	Soybean	nucleus	84.18	81.17
PGSC0003DMT400019171	Potato	cytosol	82.66	79.07
GSMUA_Achr1P17040_001	Banana	cytosol	83.0	78.75
Solyc11g067090.1.1	Tomato	cytosol, nucleus	82.15	78.46
Bra019430.1-P	Field mustard	cytosol	79.12	75.56
CDX99192	Canola	cytosol	78.96	75.4
CDY08708	Canola	cytosol	78.79	75.24
AT3G44600.1	Thale cress	cytosol	79.63	74.96
OQU80719	Sorghum	cytosol	79.12	72.64
TraesCS7A01G277700.1	Wheat	cytosol	78.96	72.38
TraesCS7D01G277600.1	Wheat	nucleus	78.79	72.22
TraesCS7B01G175400.1	Wheat	cytosol	78.62	72.07
Zm00001d049958_P002	Maize	cytosol	79.12	70.04
HORVU7Hr1G058730.3	Barley	cytosol, mitochondrion, nucleus	78.79	69.13
VIT_15s0048g01780.t01	Wine grape	cytosol	13.64	50.62
VIT_08s0007g02900.t01	Wine grape	cytosol	13.3	47.59
VIT_00s0513g00020.t01	Wine grape	cytosol	16.33	29.31
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	12.29	25.8
VIT_07s0129g00040.t01	Wine grape	cytosol	21.21	21.11
VIT_04s0008g01370.t01	Wine grape	cytosol	13.13	15.66
VIT_19s0027g01660.t01	Wine grape	nucleus	10.94	10.19

Protein Annotations

EntrezGene:100263690	wikigene:100263690	MapMan:18.12.1	Gene3D:2.130.10.10	Gene3D:2.40.100.10	EMBL:AM476951
ProteinID:CAN66191	ProteinID:CAN66191.1	ProteinID:CCB44168	ProteinID:CCB44168.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:F6GW33	EMBL:FN594957	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001680
InterPro:IPR002130	InterPro:IPR015943	InterPro:IPR029000	EntrezGene:LOC100263690	wikigene:LOC100263690	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	SMART:SM00320
SUPFAM:SSF50891	SUPFAM:SSF50978	UniParc:UPI0002109A12	ArrayExpress:VIT_06s0061g01590	EnsemblPlantsGene:VIT_06s0061g01590	EnsemblPlants:VIT_06s0061g01590.t01
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002269959	RefSeq:XP_002269959.2	SEG:seg

Description

No Description!

Coordinates

chr6:+:19509031..19533720

Molecular Weight (calculated)

67230.9 Da

IEP (calculated)

8.754

GRAVY (calculated)

-0.317

Length

594 amino acids

Sequence
(BLAST)

001: MVALTHPLAQ LFSKTSKVLE DKQPLIQNLH LHKKKLMLLR QHADFLLFVS IFKGHLKFWK KTAIGIEFAK HFRSHLNAIE GLAVSVDGLL CCTISNDDSV
101: KVYDVVNYDM MVMIRLPFVP GAVEWVSKQG DVKARLAISD RNSSFVHVYD ARAGSNEPII SREIHLGPIK VMKYNHVFDS VISADANGII EYWNPNTLQF
201: PENEVNFRLK SDTNLFEIVK CKTTVSSIEV SPDGKQFSIT SPDHRIRIFW FKTGKLRRVY DESLEVAQDL QRSDAPLYRL EAIDFGRRMA VEKEIEKTES
301: APQPNAIFDG SSNFLIYATL LGIKVVNLHT NKVARILGKV ENNDRFLRIA LYQGDRSSKK VRKIPAAAAN VNESKEPLTD PTLLCCAFKK HRIYLFSRRE
401: PEEPEDATKG RDVFNEKPPP DELLAASDIG KAVTTSLPDN VILHTTMGDI HMRLYPEECP KTVENFTTHC RNGYYDNLIF HRVIKGFMIQ TGDPLGDGTG
501: GQSIWGREFE DEFHKSLRHD RPFTLSMANA GPNTNGSQFF ITTVATPWLD NKHTVFGRVV KGMDVVQGIE KVKTDKADKP YQDVKILNVT VPKA

Best Arabidopsis Sequence Match ( AT3G44600.1 )
(BLAST)

001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S

Arabidopsis Description

CYP71Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.