Factsheet for VIT_07s0129g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0513g00020.t01	Wine grape	cytosol	51.93	93.66
KRH28354	Soybean	nucleus	83.25	83.25
KRH77127	Soybean	nucleus	83.25	83.25
PGSC0003DMT400055240	Potato	cytosol	80.4	80.54
Solyc02g092380.2.1	Tomato	nucleus	80.4	80.54
GSMUA_Achr1P22460_001	Banana	cytosol	79.56	79.83
Os03t0201100-01	Rice	cytosol	19.77	79.19
EER92686	Sorghum	cytosol	76.38	77.16
TraesCS4B01G260100.1	Wheat	cytosol	75.88	76.78
TraesCS4D01G259800.1	Wheat	cytosol	75.88	76.65
TraesCS4A01G045200.1	Wheat	cytosol	75.71	76.61
HORVU4Hr1G070330.9	Barley	cytosol	75.54	76.44
Bra024442.1-P	Field mustard	cytosol	76.05	76.05
CDY08725	Canola	cytosol	76.05	76.05
CDY36499	Canola	cytosol	75.88	75.88
AT5G67530.1	Thale cress	cytosol	75.54	75.8
Zm00001d028109_P006	Maize	cytosol	76.05	68.27
VIT_15s0048g01780.t01	Wine grape	cytosol	15.08	56.25
VIT_08s0007g02900.t01	Wine grape	cytosol	12.23	43.98
VIT_06s0061g01590.t01	Wine grape	cytosol	21.11	21.21
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	9.72	20.49
VIT_04s0008g01370.t01	Wine grape	cytosol	16.58	19.88
VIT_19s0027g01660.t01	Wine grape	nucleus	12.4	11.6

Protein Annotations

EntrezGene:100241654	wikigene:100241654	EntrezGene:100854318	wikigene:100854318	MapMan:18.12.1	Gene3D:2.40.100.10
Gene3D:3.30.40.10	ProteinID:CBI33682	ProteinID:CBI33682.3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
UniProt:D7TT60	EMBL:FN596246	GO:GO:0000209	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	GO:GO:0034450	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR029000	EntrezGene:LOC100241654	wikigene:LOC100241654	EntrezGene:LOC100854318	wikigene:LOC100854318	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SMART:SM00504
SUPFAM:SSF50891	SUPFAM:SSF57850	TIGR:TC67101	UniParc:UPI0001BE42B2	InterPro:Ubox_domain	ArrayExpress:VIT_07s0129g00040
EnsemblPlantsGene:VIT_07s0129g00040	EnsemblPlants:VIT_07s0129g00040.t01	RefSeq:XP_002276839	RefSeq:XP_002276839.2	RefSeq:XP_003635386	RefSeq:XP_003635386.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:15331752..15344208

Molecular Weight (calculated)

65300.2 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.526

Length

597 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKNA SVPFKRLPFY CCAVTFTPFG DPVCTSDGTV FDIMNIIPYI RKFGKHPVTG APLKQEDLIP LTFHKNSDGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNLKTKN WKELLTDEPF TREDLITIQN PNALDSKALL DFDHVKNSLK LDDEELKKMG LDPTHGINVK
201: GDMKQMLEEL GTEKARQTAL HGGGGNKAQN ERAAALAAIL AARSRIKEES ESDKNGEGKT GQTFSIVDAA SASVHGRSAA AAKATSSDKT AARIAMHMAG
301: ERAPVNAKMV KSRFTTGAAS RSFTSTSYDP VTKNEFEYIK VEKNPTKKGY VQLHTTHGDL NIELHCDITP RACENFITLC ERGYYNGIAF HRNIRNFMIQ
401: GGDPTGTGSG GESIWGKPFK DELNSKLLHS GRGVVSMANS GPHTNGSQFF ILYKSANHLN FKHTVFGGVV GGLMTLSAME KVPVDDNDRP LEEIKITGVT
501: VFVNPYTEPD AEEEEEKTKD GKNAEDEEND KVGAWFSNPG TGTAEPGDVG GGVGKYLKAR TGQAEHAAAD TGLQAMTVAK KRKLGVPTAE FKDFSAW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.