Factsheet for TraesCS4B01G260100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G67530.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G259800.1	Wheat	cytosol	99.49	99.32
TraesCS4A01G045200.1	Wheat	cytosol	98.81	98.81
HORVU4Hr1G070330.9	Barley	cytosol	98.47	98.47
EER92686	Sorghum	cytosol	88.31	88.16
Os03t0201100-01	Rice	cytosol	21.69	85.91
Zm00001d028109_P006	Maize	cytosol	87.63	77.74
KRH77127	Soybean	nucleus	77.8	76.88
KRH28354	Soybean	nucleus	77.46	76.55
GSMUA_Achr1P22460_001	Banana	cytosol	76.95	76.3
VIT_07s0129g00040.t01	Wine grape	cytosol	76.78	75.88
Solyc02g092380.2.1	Tomato	nucleus	74.75	73.99
PGSC0003DMT400055240	Potato	cytosol	74.75	73.99
VIT_00s0513g00020.t01	Wine grape	cytosol	41.19	73.41
CDY36499	Canola	cytosol	73.39	72.53
CDY08725	Canola	cytosol	73.22	72.36
AT5G67530.1	Thale cress	cytosol	72.88	72.27
Bra024442.1-P	Field mustard	cytosol	73.05	72.19
TraesCS7B01G180900.1	Wheat	cytosol	11.69	42.07
TraesCS7B01G175400.1	Wheat	cytosol	24.58	22.38
TraesCS2B01G255000.1	Wheat	mitochondrion	8.31	21.03
TraesCS3B01G239300.1	Wheat	nucleus	16.27	19.2
TraesCS4B01G241800.1	Wheat	nucleus	13.05	16.52
TraesCS7B01G371900.1	Wheat	nucleus	13.05	13.77

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0004842
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071
PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4B01G260100	EnsemblPlants:TraesCS4B01G260100.1
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd01923	TIGR:cd16663	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:527004905..527008338

Molecular Weight (calculated)

64866.6 Da

IEP (calculated)

8.047

GRAVY (calculated)

-0.568

Length

590 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITATEWAT EWGGAKNREA IAPFQRLPFY CCALTFLPFE DPVCTADGSV FDLMSIIPYI KKFGKHPVTG AALKQEDLIP LTFHKNTDGE
101: FQCPVLNKVF TEFTHIVAVK TTGNVFCYEA IQELNIKPKN WKELLTDEPF TRKDLITIQN PNALDTKVLG QFDHVRQGLK LDDEELQRMK DDPTYNINVA
201: GDLKQMMKEL GTEKGKLAFL HGGGGQKAQK ERAAALAVLL AKEEKSDSKS SKEPKPPQPF SVVDAASASV HGRSAAAAKS GTAEKTAARI AMHRAGDRDP
301: INAKLVKSRY TTGAASRSFT STSYDPVTKN KFEYVKVERN PKKKGYVQLH TTHGDLNLEL HCDITPRTCE NFLTHCENGY YNGLIFHRSI KNFMIQGGDP
401: TGTGSGGESI WGQPFKDELN SKLLHSGRGV VSMANSGPHT NGSQFFILYK SAAHLNFKHT VFGMVVGGLH NLSAMEKVPV DDDDRPLEEI KLLKVSVFVN
501: PYTEPDEEEE KAKEEEKNKD EDHDKVGSWY SNPGTGVSAS TSAGGGVGKY LKARTAGSAD ATGNAATADD SSKKRKASAP SVEFKDFSGW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.