CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G070330.9	Barley	cytosol	88.32	88.47
TraesCS4B01G260100.1	Wheat	cytosol	88.16	88.31
TraesCS4D01G259800.1	Wheat	cytosol	88.16	88.16
TraesCS4A01G045200.1	Wheat	cytosol	87.65	87.8
Zm00001d028109_P006	Maize	cytosol	97.63	86.77
Os03t0201100-01	Rice	cytosol	21.83	86.58
GSMUA_Achr1P22460_001	Banana	cytosol	79.19	78.66
KRH28354	Soybean	nucleus	79.19	78.39
KRH77127	Soybean	nucleus	78.85	78.06
VIT_07s0129g00040.t01	Wine grape	cytosol	77.16	76.38
PGSC0003DMT400055240	Potato	cytosol	76.65	76.01
Solyc02g092380.2.1	Tomato	nucleus	76.65	76.01
VIT_00s0513g00020.t01	Wine grape	cytosol	42.3	75.53
CDY36499	Canola	cytosol	75.3	74.54
CDY08725	Canola	cytosol	75.13	74.37
Bra024442.1-P	Field mustard	cytosol	74.96	74.2
AT5G67530.1	Thale cress	cytosol	74.45	73.95
EER87777	Sorghum	cytosol	15.57	57.5
EES14084	Sorghum	cytosol	12.69	45.73
OQU80719	Sorghum	cytosol	24.2	22.1
KXG36207	Sorghum	mitochondrion	8.46	21.46
EES03161	Sorghum	nucleus	16.07	18.52
EER88795	Sorghum	cytosol	13.03	13.77

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	EntrezGene:8054237	UniProt:C5WTU1	ncoils:Coil
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER92686	ProteinID:EER92686
ProteinID:EER92686.1	GO:GO:0000209	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	GO:GO:0034450	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR029000	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698
PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SMART:SM00504	EnsemblPlantsGene:SORBI_3001G466700	SUPFAM:SSF50891	SUPFAM:SSF57850
UniParc:UPI0001A828EA	InterPro:Ubox_domain	RefSeq:XP_002465688.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:74000494..74004078

Molecular Weight (calculated)

65033.9 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.578

Length

591 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITRTEWAT EWGGAKQKDV GTPFKRLPFY CCSLTFLPFE DPVCTVDGSV FDLMSIVPYL KKFGKHPVTG APLKHEDLIP LTFHKNSDGE
101: FQCPVLNKVF TEFTHIVAVK TTGNVFCYEA IQELNIKPKN WKELLTDEPF TRNDLITIQN PNVVDGKVLG EFDHVKKGLK LEDEELQRMK DDPTYNINIS
201: GDLKQMIKDL GTEKGKEAFL QGGGGLKAQK ERAAALAAIL ARKEKDDSKP GKEPKPNQSF SIVDAASASV HGRSAAAAKA TSAEKTAARI AMHMAGERAP
301: VNAKLVKSRY TTGAASRSFT STSYDPVTKN EYEYVKVERN PKKKGYVQLH TTHGDLNLEL HCDITPRTCE NFLTHCENGY YDGLIFHRSI KNFMIQGGDP
401: TGTGSGGESI WGKPFKDEPN SKLLHSGRGV VSMANSGPHT NGSQFFILYK SAPHLNFKHT VFGMVVGGLT TLSAMEKVPV DDDDRPLEEI KILKVSIFVN
501: PYTEPDEEEE KAKEEEEKKK DEDYDKVGSW YSNPGTGVAG STSTGGGVGK YLKARTAGSV DVTGSAGAAD DSSKKRKATA SSVEFKDFSG W

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.