Factsheet for VIT_00s0513g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00040.t01	Wine grape	cytosol	93.66	51.93
VIT_15s0048g01780.t01	Wine grape	cytosol	25.08	51.88
KRH28354	Soybean	nucleus	82.18	45.56
KRH77127	Soybean	nucleus	81.87	45.39
Solyc02g092380.2.1	Tomato	nucleus	81.27	45.13
PGSC0003DMT400055240	Potato	cytosol	80.97	44.97
GSMUA_Achr1P22460_001	Banana	cytosol	78.25	43.53
VIT_08s0007g02900.t01	Wine grape	cytosol	21.45	42.77
EER92686	Sorghum	cytosol	75.53	42.3
TraesCS4A01G045200.1	Wheat	cytosol	73.72	41.36
TraesCS4D01G259800.1	Wheat	cytosol	73.72	41.29
HORVU4Hr1G070330.9	Barley	cytosol	73.41	41.19
TraesCS4B01G260100.1	Wheat	cytosol	73.41	41.19
AT5G67530.1	Thale cress	cytosol	73.72	41.01
Bra024442.1-P	Field mustard	cytosol	73.72	40.87
CDY36499	Canola	cytosol	73.72	40.87
CDY08725	Canola	cytosol	73.72	40.87
Zm00001d028109_P006	Maize	cytosol	74.92	37.29
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	14.8	17.31
VIT_06s0061g01590.t01	Wine grape	cytosol	29.31	16.33
VIT_04s0008g01370.t01	Wine grape	cytosol	22.66	15.06
VIT_19s0027g01660.t01	Wine grape	nucleus	19.94	10.34
Os03t0201100-01	Rice	cytosol	0.3	0.67

Protein Annotations

EntrezGene:100854318	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CBI33264	ProteinID:CBI33264.3	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7TRY8	EMBL:FN596075	GO:GO:0000209	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	GO:GO:0034450	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100854318
PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SUPFAM:SSF50891
UniParc:UPI0001BE3E6A	ArrayExpress:VIT_00s0513g00020	EnsemblPlantsGene:VIT_00s0513g00020	EnsemblPlants:VIT_00s0513g00020.t01	RefSeq:XP_010647135.2	SEG:seg

Description

No Description!

Coordinates

chrUn:-:31001213..31002813

Molecular Weight (calculated)

35636.6 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.328

Length

331 amino acids

Sequence
(BLAST)

001: MGLDPTHGIN VKGDMKQMLE ELGTEKARQT ALHGGGGNKA QNERAAALAA ILAARSRIKE ESESDKNGEG KTGQTFSIVD AASASVHGRS AAAAKATSSD
101: KTAARIAMHM AGERAPVNAK MVKSRFTTGA ASRSFTSTSY DPVTKNEFEY IKVEKNPTKK GYVQLHTTHG DLNIELHCDI TPRACENFIT LCERGYYNGI
201: AFHRNIRNFM IQGGDPTGTG SGGESIWGKP FKDELNSKLL HSGRGVVSMA NSGPHTNGSQ FFILYKSANH LNFKHTVFGG VVGGLMTLSA MEKVPVDDND
301: RPLVSITIGF LHFRIISILK LKLLGILISS N

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.