Factsheet for GSMUA_Achr1P22460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77127	Soybean	nucleus	81.85	81.57
KRH28354	Soybean	nucleus	81.18	80.9
VIT_07s0129g00040.t01	Wine grape	cytosol	79.83	79.56
EER92686	Sorghum	cytosol	78.66	79.19
VIT_00s0513g00020.t01	Wine grape	cytosol	43.53	78.25
Solyc02g092380.2.1	Tomato	nucleus	77.65	77.52
PGSC0003DMT400055240	Potato	cytosol	77.65	77.52
Os03t0201100-01	Rice	cytosol	19.33	77.18
TraesCS4B01G260100.1	Wheat	cytosol	76.3	76.95
TraesCS4D01G259800.1	Wheat	cytosol	76.3	76.82
TraesCS4A01G045200.1	Wheat	cytosol	76.13	76.78
HORVU4Hr1G070330.9	Barley	cytosol	76.13	76.78
AT5G67530.1	Thale cress	cytosol	73.78	73.78
CDY36499	Canola	cytosol	73.45	73.2
CDY08725	Canola	cytosol	73.28	73.03
Bra024442.1-P	Field mustard	cytosol	73.11	72.86
Zm00001d028109_P006	Maize	cytosol	77.65	69.47
GSMUA_Achr8P32900_001	Banana	cytosol	11.76	42.68
GSMUA_Achr5P15930_001	Banana	mitochondrion	8.57	21.79
GSMUA_Achr1P17040_001	Banana	cytosol	21.68	20.61
GSMUA_Achr10P...	Banana	endoplasmic reticulum	8.07	20.51
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	14.79	15.58
GSMUA_Achr10P...	Banana	cytosol	12.1	13.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0004842
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G22460_001	EnsemblPlants:GSMUA_Achr1P22460_001	EnsemblPlants:GSMUA_Achr1T22460_001
InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR029000	UniProt:M0S254	PFAM:PF00160
PFAM:PF04564	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071
PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891	SUPFAM:SSF57850	UniParc:UPI000295FBD9	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase-like 2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22460_001]

Coordinates

chr1:+:16952357..16958235

Molecular Weight (calculated)

65397.8 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.592

Length

595 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKPKDN STPFKRLPFY CCSLTFTPFE DPVCTADGSV FDIMNIVSYI TKYGKHPVTG APLKEEDLVP LTFHKNSDGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCHEA IKELNLKTKN WKELITDEPF TKDDLITIQN PNTLDSKVLS DFDHVKNSLK VDDEDLRRMK EDPTYNINLS
201: GDVKQMLREL GTEKGKIAAL HGGGGEKARK ERAAALAAIL DSRSRIKEDS NSGANGDSNS IQAFSIVDAA SASVHGRSAA AAKAASTDKT AARIALHMAG
301: ERKPVNAKLV KSRFTTGAAS RSFTSTAYDP VTRNEFEYVK VEKNPKKKGY LQLHTTHGDL NLELHCDITP RSCENFITLC ENGYYNGVPF HRNIRNFMIQ
401: GGDPTGTGKG GQSIWGKPFN DELNSKLLHS GRGVVSMANS GPHTNGSQFF ILYKSANHLN FKHTVFGSVV GGLSTLAAME KVPVDDDDRP LEEIKITSVT
501: IFVNPYSEPD EEEEKQQEEK KAADDDHDKV GSWYSNPGTG VIGSAGASGG IGKYLKARTS AATDSAGRKG AESNDFTKKR KVDVSSVEFK NFSNW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.