Factsheet for GSMUA_Achr10P20820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr1P14890_001
GSMUA_Achr1P14900_001
GSMUA_Achr3P00590_001
GSMUA_Achr4P13560_001
GSMUA_Achr4P19590_001
GSMUA_Achr6P15450_001
GSMUA_Achr7P05930_001
GSMUA_Achr8P10150_001
GSMUA_Achr9P21660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	GSMUA_Achr11P...	AT1G09140.1	16497658
AT1G53720.1	GSMUA_Achr8P10150_001	AT1G09140.1	16497658
AT1G53720.1	GSMUA_Achr1P09660_001	AT1G23860.1	16497658
AT1G53720.1	GSMUA_AchrUn_...	AT1G23860.1	16497658
AT1G53720.1	GSMUA_Achr10P...	AT2G37340.1	16497658
AT1G53720.1	GSMUA_Achr6P15450_001	AT2G37340.1	16497658
AT1G53720.1	GSMUA_Achr4P13560_001	AT3G13570.1	16497658
AT1G53720.1	GSMUA_Achr9P21660_001	AT3G13570.1	16497658
AT1G53720.1	GSMUA_Achr11P...	AT3G61860.1	16497658
AT1G53720.1	GSMUA_Achr1P14890_001	AT4G35800.1	16497658
AT1G53720.1	GSMUA_Achr1P14900_001	AT4G35800.1	16497658
AT1G53720.1	GSMUA_Achr3P00590_001	AT4G35800.1	16497658
AT1G53720.1	GSMUA_Achr4P19590_001	AT5G62190.1	16497658
AT1G53720.1	GSMUA_Achr7P05930_001	AT5G62190.1	16497658
AT1G53720.1	GSMUA_Achr10P...	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036620_P001	Maize	nucleus	55.78	69.13
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	25.63	68.93
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	29.96	68.88
HORVU1Hr1G015670.5	Barley	cytosol	29.6	67.77
TraesCS3D01G065600.1	Wheat	cytosol	40.07	66.47
PGSC0003DMT400056014	Potato	cytosol	21.12	65.0
EER88795	Sorghum	cytosol	64.44	63.86
PGSC0003DMT400011164	Potato	cytosol	21.3	63.78
Os06t0670500-01	Rice	cytosol	64.44	63.3
TraesCS4D01G241400.1	Wheat	nucleus	54.87	63.2
HORVU7Hr1G107520.5	Barley	nucleus	63.54	62.97
TraesCS7D01G457200.1	Wheat	nucleus	63.36	62.79
TraesCS7A01G469800.1	Wheat	nucleus	63.18	62.61
TraesCS4A01G064400.1	Wheat	nucleus	53.97	62.55
TraesCS7B01G371900.1	Wheat	nucleus	62.82	62.25
TraesCS3A01G064900.1	Wheat	cytosol	45.49	62.22
TraesCS4B01G241800.1	Wheat	nucleus	52.17	62.02
PGSC0003DMT400011166	Potato	nucleus	32.31	61.3
Os06t0670400-00	Rice	cytosol	51.81	61.19
AT1G53720.1	Thale cress	nucleus	53.61	58.7
PGSC0003DMT400069100	Potato	cytosol	35.74	57.73
Bra030819.1-P	Field mustard	cytosol	54.33	55.33
Solyc07g066420.2.1	Tomato	nucleus	56.32	53.15
VIT_19s0027g01660.t01	Wine grape	nucleus	58.66	50.94
KRG93223	Soybean	nucleus	57.76	50.0
KRH13056	Soybean	nucleus	56.5	49.45
CDY72459	Canola	cytosol, extracellular, plastid	10.11	47.86
GSMUA_Achr8P32900_001	Banana	cytosol	12.27	41.46
CDY10512	Canola	nucleus	55.96	31.25
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	18.59	18.23
GSMUA_Achr5P15930_001	Banana	mitochondrion	6.5	15.38
GSMUA_Achr10P...	Banana	endoplasmic reticulum	6.5	15.38
GSMUA_Achr1P22460_001	Banana	cytosol	13.0	12.1
GSMUA_Achr1P17040_001	Banana	cytosol	12.45	11.02

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	Gene3D:4.10.60.10	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	InterPro:Cyclophilin_PPIL4	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G20820_001
EnsemblPlants:GSMUA_Achr10P20820_001	EnsemblPlants:GSMUA_Achr10T20820_001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR002130	InterPro:IPR012677
InterPro:IPR029000	UniProt:M0RK07	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0002960248	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G20820_001]

Coordinates

chr10:-:26681586..26692009

Molecular Weight (calculated)

64331.0 Da

IEP (calculated)

5.947

GRAVY (calculated)

-1.206

Length

554 amino acids

Sequence
(BLAST)

001: MSVLIVTSLG DIVVDLHTDR CPLTTKNFLK LCKMKYYNGC LFHKVEKDFL AQTGDRTGTG TGGDSAYKFL YGEQARFFED EIHPDLKHTR TGTIAMASAG
101: QNLNASQFYF TLRDDIDYLD GKHTVFGTVE EKEGLDTLAK INEAYADNNG RPFKDIRIKH TYILDDPFDD PPQLADFIPE NSPEGKPADE IAEERLEDNW
201: VPLDETLGTE ELEERLRVKE AHTNAAILES IGDIPDSDIK PPENVLFVCK LNPVTQDEDL YTIFSRFGNV MSADIIRDYK TGDSLCYAFI EFETKEACER
301: AYFKMDNTLI DDRRIHVDFS QSVARLWSQY RQGKRSHPTK EGCFKCGAPD HFARDCDKED SDNKQKGPKY VLKDDNTQHG GHEDKRYDML FDEDNLETVG
401: HRANGQEKTK KQNASHHSTE RNQDKRISDR HRHGDDITRY DRVDGKSRGN RKHGDYHRDK RADEKGDEDR EHRRRLHESS RHVYDSGDPK RSFGSRLENE
501: REGGDSHREN EGDDRKRLNA DELRRRNDGD RKRKSRDHDV DDYRERKYRE KDRK

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.