Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | GSMUA_Achr10P... | AT1G49590.1 | 23524848 |
| AT4G35800.1 | GSMUA_Achr10P... | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 9.18 | 62.42 |
| KRH28855 | Soybean | nucleus | 90.55 | 55.61 |
| Solyc02g083350.2.1 | Tomato | nucleus | 91.18 | 55.42 |
| Zm00001d024583_P003 | Maize | nucleus | 91.27 | 55.35 |
| KRH76591 | Soybean | nucleus | 90.02 | 55.28 |
| PGSC0003DMT400009249 | Potato | nucleus | 90.55 | 55.25 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 91.09 | 55.18 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 91.0 | 54.92 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 91.0 | 54.92 |
| EES13372 | Sorghum | nucleus | 90.82 | 54.87 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 68.27 | 54.4 |
| Bra010510.1-P | Field mustard | nucleus | 87.61 | 53.89 |
| AT4G35800.1 | Thale cress | nucleus | 87.79 | 53.56 |
| KRH40807 | Soybean | nucleus | 84.49 | 53.5 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 87.97 | 53.27 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 87.97 | 53.12 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 87.97 | 53.09 |
| CDY08876 | Canola | nucleus | 75.4 | 52.25 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 88.15 | 52.25 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 84.05 | 51.53 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 83.07 | 51.15 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 82.8 | 51.13 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 80.93 | 50.98 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 83.51 | 50.73 |
| EES08565 | Sorghum | nucleus | 81.02 | 48.4 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 61.59 | 46.97 |
| Os05t0151000-00 | Rice | nucleus | 77.09 | 46.96 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 30.84 | 40.05 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 13.9 | 39.69 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 29.32 | 37.9 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 29.14 | 37.67 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 29.14 | 37.54 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 28.52 | 35.16 |
| Bra011638.1-P | Field mustard | nucleus | 84.49 | 34.99 |
| CDX75527 | Canola | nucleus | 83.24 | 34.39 |
| CDX69166 | Canola | cytosol | 76.92 | 32.69 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 25.94 | 18.36 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 20.86 | 15.62 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.39 | 14.18 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 16.22 | 12.7 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 16.22 | 10.87 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 0.98 | 4.17 |
| CDY71816 | Canola | cytosol | 0.89 | 3.51 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 1.43 | 3.34 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | MapMan:15.1.2.1 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| EnsemblPlantsGene:GSMUA_Achr1G14900_001 | EnsemblPlants:GSMUA_Achr1P14900_001 | EnsemblPlants:GSMUA_Achr1T14900_001 | InterPro:IPR038120 | InterPro:IPR038593 | UniProt:M0RZZ8 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04990 | PFAM:PF04992 | PFAM:PF04998 | PFAM:PF05000 |
| PFAM:PF05001 | PRINTS:PR01217 | ScanProsite:PS00115 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_II_repeat_euk |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 | InterPro:RNA_pol_Rpb1_7 |
| InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI00029508DC |
| SEG:seg | : | : | : | : | : |
Description
DNA-directed RNA polymerase II subunit RPB1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14900_001]
Coordinates
chr1:+:11248397..11255119
Molecular Weight (calculated)
123286.0 Da
IEP (calculated)
5.173
GRAVY (calculated)
-0.431
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPYSTFRLNL SVTSPYNADF DGDEMNMHVP QSFETRAEVI ELMMVPKCIV SPQSNRPVMG IVQDTLLGCR KITKRDTFIE KDVFMNILMW WEDFDGKVPA
0101: PAILKPRPLW TGKQVFNLII PKQINLIRFS AWHSESETGF ITPGDTLVRI EKGELLSGTL CKKTLGTSTG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL
0201: LQNAFSIGIG DTIADAATME KINETISKAK NDVKDLIKLA QEKQLEAEPG RTMMDSFENR VNQVLNKARD DAGSSAQKSL SESNNLKAMV TAGSKGSFIN
0301: ISQMTACVGQ QNVEGKRIPF GFIDRTLPHF TKDDYGPESR GFVENSYLRG LTPQEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR
0401: NSLGDVIQFL YGEDGMDAHV EDLKTIREFR NVRPSDMHPM EIVEAIDKLQ ERLKVEYRLT REAFEWVIGE IESRFLQSLV APGEMIGCVA AQSIGEPATQ
0501: MTLNTFHYAG VSAKNVTLGV PRLREIINVA KKIKTPSLSV YLKPGVNKKK ELAKNVQCAL EYTTLRSISP WLLRIELNRE MMVDKKLSMA DIAEKINHEF
0601: DDDLTCIFND DNADKLILRI RKINRFDENE GFKPDVEWML DTEGVNLLAV MCHEDIDATR TTSNHLIEVI EVLGIEAVRR SLLDELRVVI SFDGSYVNYR
0701: HLAILCDTMT YRGHLMAITR HGINRNDTGP MMRCSFEETV DILLDAAVYA EGDHLRGVTE NIMLGQLAPI GTGDCALYLN DQMLQQAIEL QLPSYMDGGF
0801: GGMMSPSYLL SPNIRASPIT DAQFSPYVGG MAFSPSSSPG YSPSSPGYSP SSPGYSPTSP GYSPTSPGYS PTSPGYSPTS PTYSPSSPGY SPTSPAYSPT
0901: SPSYSPTSPS YSPTSPSYSP TSPTYSPTSP SYSPTSPSYS PTSPSYSPTS PVYSPTSPAY SPTSPAYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP
1001: SYSPTSPAYS PTSPGYSPTS PSYSPTSPSY SPTSPSYNPA SAKYSPSLAY SPSSPRLSPS SPYGQSSPNY SPFNSRSGPD YSPSSPQYSP SAGYSPTSPG
1101: YSPSSTSQYT PQMSNEDEES TR
0101: PAILKPRPLW TGKQVFNLII PKQINLIRFS AWHSESETGF ITPGDTLVRI EKGELLSGTL CKKTLGTSTG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL
0201: LQNAFSIGIG DTIADAATME KINETISKAK NDVKDLIKLA QEKQLEAEPG RTMMDSFENR VNQVLNKARD DAGSSAQKSL SESNNLKAMV TAGSKGSFIN
0301: ISQMTACVGQ QNVEGKRIPF GFIDRTLPHF TKDDYGPESR GFVENSYLRG LTPQEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR
0401: NSLGDVIQFL YGEDGMDAHV EDLKTIREFR NVRPSDMHPM EIVEAIDKLQ ERLKVEYRLT REAFEWVIGE IESRFLQSLV APGEMIGCVA AQSIGEPATQ
0501: MTLNTFHYAG VSAKNVTLGV PRLREIINVA KKIKTPSLSV YLKPGVNKKK ELAKNVQCAL EYTTLRSISP WLLRIELNRE MMVDKKLSMA DIAEKINHEF
0601: DDDLTCIFND DNADKLILRI RKINRFDENE GFKPDVEWML DTEGVNLLAV MCHEDIDATR TTSNHLIEVI EVLGIEAVRR SLLDELRVVI SFDGSYVNYR
0701: HLAILCDTMT YRGHLMAITR HGINRNDTGP MMRCSFEETV DILLDAAVYA EGDHLRGVTE NIMLGQLAPI GTGDCALYLN DQMLQQAIEL QLPSYMDGGF
0801: GGMMSPSYLL SPNIRASPIT DAQFSPYVGG MAFSPSSSPG YSPSSPGYSP SSPGYSPTSP GYSPTSPGYS PTSPGYSPTS PTYSPSSPGY SPTSPAYSPT
0901: SPSYSPTSPS YSPTSPSYSP TSPTYSPTSP SYSPTSPSYS PTSPSYSPTS PVYSPTSPAY SPTSPAYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP
1001: SYSPTSPAYS PTSPGYSPTS PSYSPTSPSY SPTSPSYNPA SAKYSPSLAY SPSSPRLSPS SPYGQSSPNY SPFNSRSGPD YSPSSPQYSP SAGYSPTSPG
1101: YSPSSTSQYT PQMSNEDEES TR
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.