Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g108430.2.1 | |
| Solyc07g066420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | Solyc01g108430.2.1 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | Solyc07g066420.2.1 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009249 | Potato | nucleus | 99.24 | 99.62 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 91.55 | 91.25 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 55.42 | 91.18 |
| KRH28855 | Soybean | nucleus | 89.65 | 90.59 |
| KRH76591 | Soybean | nucleus | 89.33 | 90.26 |
| KRH40807 | Soybean | nucleus | 84.67 | 88.21 |
| Bra010510.1-P | Field mustard | nucleus | 86.67 | 87.72 |
| AT4G35800.1 | Thale cress | nucleus | 87.16 | 87.49 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.7 | 87.47 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 86.94 | 86.66 |
| Zm00001d024583_P003 | Maize | nucleus | 86.84 | 86.65 |
| EES13372 | Sorghum | nucleus | 87.16 | 86.65 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 87.16 | 86.55 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 87.05 | 86.44 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 40.41 | 86.34 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 12.13 | 84.85 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 84.99 | 84.67 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 85.1 | 84.51 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 84.99 | 84.45 |
| CDY08876 | Canola | nucleus | 73.08 | 83.32 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 85.05 | 82.94 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 66.09 | 82.94 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 81.58 | 82.88 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 82.02 | 82.73 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 38.89 | 82.72 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 38.84 | 82.6 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 63.0 | 82.6 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 79.47 | 82.37 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 38.73 | 82.09 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 81.69 | 81.65 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 79.79 | 80.85 |
| CDY71816 | Canola | cytosol | 12.41 | 80.35 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 38.89 | 78.9 |
| Os05t0151000-00 | Rice | nucleus | 78.39 | 78.56 |
| EES08565 | Sorghum | nucleus | 79.2 | 77.85 |
| Bra011638.1-P | Field mustard | nucleus | 82.88 | 56.48 |
| CDX69166 | Canola | cytosol | 79.85 | 55.83 |
| CDX75527 | Canola | nucleus | 82.07 | 55.78 |
| Solyc11g072730.1.1 | Tomato | nucleus | 25.57 | 33.96 |
| Solyc10g080350.1.1 | Tomato | nucleus | 20.75 | 22.84 |
| Solyc08g080210.2.1 | Tomato | nucleus | 11.86 | 18.16 |
| Solyc01g096390.2.1 | Tomato | nucleus | 16.14 | 17.76 |
Protein Annotations
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:K4BAK3]
Coordinates
chr2:-:46789658..46798211
Molecular Weight (calculated)
205196.0 Da
IEP (calculated)
5.891
GRAVY (calculated)
-0.498
Length
1846 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDLRFPFSPA EVAKVRTVQF GIVSPDEIRQ MSVVHIEHGE TTERGKPKPG GLSDPRLGTI DRKMKCETCM ANMAECPGHF GHLELAKPMF HIGFMKPVLS
0101: ILRCVCFNCS KILADEDDPK FKQAMRIRNP KNRLRKMLDA CKNKTKCEGG DEIDVQGQDT EEPVKKSRGG CGAQQPKISI DGMKMVAEYK MQKKKSDDPE
0201: QMPEPVERKQ QLSAERVLSI LKRVSDEDCL LLGLNPEFAR PDWMILQALP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLKRQE RNGAPAHIIS
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK SKEGRIRGNL MGKRVDFSAR TVITPDPTIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR DDGQRLDLRY LKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKVTKR DTFIEKDVFM NILMWWEDFD GKVPAPVILK PRPLWTGKQV FNLIIPKQIN
0601: LLRYSAWHND SEKGYITPGD TQVRIEKGEL LSGTLCKKTL GTSTGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQQAF SIGIGDTIAD ASTMEKINET
0701: ISNAKAKVKE LIKAAQEKLL EAEPGRTMME SFENRVNQVL NKARDDAGSS AEKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFIDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDSVWIETQK
0901: LDSLKAKKGT FDDMYAYEID DPNWNPSYML PEAVEDLKGI REIRSVFDAE VQKLEADRHQ LGTEIAVTGD NSWPLPVNIQ RLVLNAQKTF KIDFRRPSDM
1001: HPMEIVEAVD KLQERLKVVP GDDYLSMEAQ KNATLFFNIL LRSALASKRV LKEYRLSREA FEWVVGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVYLK PEVGKTKERA KTVQCALEYT TLRSVTQATE VWYDPDPMST LIEEDVEFVK SYYEMPDEEI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA EKINLEFDDD LTCIFNDDNA EKLILRIRIM NDEAPKGELD ESAEDDVFLK KIESNMLTEM ALRGIPDINK
1301: VFIKNSKVQK FDDNEGFKAE NEWMLDTEGV NLLAVMTHED VDASRTTSNH LIEVIEVLGI EAVRRSLLDE LRVVISFDGS YVNYRHLAIL CDTMTYRGHL
1401: MAITRHGINR NDTGPMMRCS FEETVDILLD AAVFAESDHL RGVTENIMLG QLAPIGTGGC SLYLNEEMLK QAIEIPLPSY MEGGLEFGMT PGRSPISGTP
1501: YHDGMMSPNY LLSPNMRMSP ITDAQFSPYV GGMAFSPTSS PGYSPSSPGY SPSSPGYSPT SPGYSPTSPG YSPTSPGYSP TSPTYSPSSP GYSPTSPAYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPA YSPTSPAYSP TSPAYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPAYSPTSPG YSPTSPSYSP TSPSYSPTSP SYNPSARYSP SLAYSPTSPK LSPSSPYSPS SPSYSPTSPS YSPTSPSYSP SSPTYSPSSP YNNSGTSPDY
1801: SPSSPQYSPS AGYSPSAPGY SPSSTSQYTP RVSERDNRSV KDDKAG
0101: ILRCVCFNCS KILADEDDPK FKQAMRIRNP KNRLRKMLDA CKNKTKCEGG DEIDVQGQDT EEPVKKSRGG CGAQQPKISI DGMKMVAEYK MQKKKSDDPE
0201: QMPEPVERKQ QLSAERVLSI LKRVSDEDCL LLGLNPEFAR PDWMILQALP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLKRQE RNGAPAHIIS
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK SKEGRIRGNL MGKRVDFSAR TVITPDPTIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR DDGQRLDLRY LKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKVTKR DTFIEKDVFM NILMWWEDFD GKVPAPVILK PRPLWTGKQV FNLIIPKQIN
0601: LLRYSAWHND SEKGYITPGD TQVRIEKGEL LSGTLCKKTL GTSTGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQQAF SIGIGDTIAD ASTMEKINET
0701: ISNAKAKVKE LIKAAQEKLL EAEPGRTMME SFENRVNQVL NKARDDAGSS AEKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFIDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDSVWIETQK
0901: LDSLKAKKGT FDDMYAYEID DPNWNPSYML PEAVEDLKGI REIRSVFDAE VQKLEADRHQ LGTEIAVTGD NSWPLPVNIQ RLVLNAQKTF KIDFRRPSDM
1001: HPMEIVEAVD KLQERLKVVP GDDYLSMEAQ KNATLFFNIL LRSALASKRV LKEYRLSREA FEWVVGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVYLK PEVGKTKERA KTVQCALEYT TLRSVTQATE VWYDPDPMST LIEEDVEFVK SYYEMPDEEI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA EKINLEFDDD LTCIFNDDNA EKLILRIRIM NDEAPKGELD ESAEDDVFLK KIESNMLTEM ALRGIPDINK
1301: VFIKNSKVQK FDDNEGFKAE NEWMLDTEGV NLLAVMTHED VDASRTTSNH LIEVIEVLGI EAVRRSLLDE LRVVISFDGS YVNYRHLAIL CDTMTYRGHL
1401: MAITRHGINR NDTGPMMRCS FEETVDILLD AAVFAESDHL RGVTENIMLG QLAPIGTGGC SLYLNEEMLK QAIEIPLPSY MEGGLEFGMT PGRSPISGTP
1501: YHDGMMSPNY LLSPNMRMSP ITDAQFSPYV GGMAFSPTSS PGYSPSSPGY SPSSPGYSPT SPGYSPTSPG YSPTSPGYSP TSPTYSPSSP GYSPTSPAYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPA YSPTSPAYSP TSPAYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPAYSPTSPG YSPTSPSYSP TSPSYSPTSP SYNPSARYSP SLAYSPTSPK LSPSSPYSPS SPSYSPTSPS YSPTSPSYSP SSPTYSPSSP YNNSGTSPDY
1801: SPSSPQYSPS AGYSPSAPGY SPSSTSQYTP RVSERDNRSV KDDKAG
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.