Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 11.51 | 73.73 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 54.96 | 71.2 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 11.65 | 71.05 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 16.83 | 70.69 |
| KRG88695 | Soybean | nucleus | 65.9 | 65.85 |
| Os04t0492300-01 | Rice | nucleus | 64.1 | 64.43 |
| Bra020267.1-P | Field mustard | nucleus | 63.17 | 64.09 |
| CDY09230 | Canola | nucleus | 63.17 | 64.09 |
| EES11045 | Sorghum | nucleus | 64.03 | 63.98 |
| Zm00001d003203_P003 | Maize | cytosol | 63.88 | 63.7 |
| AT5G60040.2 | Thale cress | cytosol | 63.31 | 63.26 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 62.88 | 62.65 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 62.73 | 62.51 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 62.66 | 62.44 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 63.09 | 61.54 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 31.73 | 61.51 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 61.58 | 61.23 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 31.65 | 61.2 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 30.14 | 60.46 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 31.94 | 58.19 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 64.46 | 56.53 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 5.68 | 53.38 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 5.83 | 50.31 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 5.32 | 50.0 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 7.12 | 37.5 |
| Solyc02g083350.2.1 | Tomato | nucleus | 33.96 | 25.57 |
| Solyc10g080350.1.1 | Tomato | nucleus | 27.63 | 22.9 |
| Solyc08g080210.2.1 | Tomato | nucleus | 14.75 | 17.0 |
| Solyc01g096390.2.1 | Tomato | nucleus | 16.76 | 13.89 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | ncoils:Coil | GO:GO:0001056 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | UniProt:K4DAY0 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 |
| InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:Solyc11g072730.1 |
| EnsemblPlants:Solyc11g072730.1.1 | UniParc:UPI0002769E41 | SEG:seg | : | : | : |
Description
DNA-directed RNA polymerase III subunit 1 [Source:Projected from Arabidopsis thaliana (AT5G60040) UniProtKB/Swiss-Prot;Acc:F4JXF9]
Coordinates
chr11:-:55925522..55955180
Molecular Weight (calculated)
155648.0 Da
IEP (calculated)
9.004
GRAVY (calculated)
-0.289
Length
1390 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNRAQESLQV TKQPYIEDVG PRKIKSIKFS LFSESEILKL AEVEVYLGLY YESTKKPIQN GLLDPRMGPP NKSGCCETCH GNFRECPGHY GYLVLALPVY
0101: NVGYLGTVVD ILKCICKCCS SILLDDKERR DILKKMRNPR TEFLKKSELH KRVVKRCNAM AGGQKTATCS KCGYMNGMVK KLQLKITHEQ GNRILDEINV
0201: AISDKRELRA SVSVPPEIDP KVVYSLFKNM SDEDCELLYL SDRPEKLLVT SIPVPPIAIR PSVFVDGGTQ SNENDITERL KRIIQANASL HQEMSDSSPV
0301: KSLNQWIDLQ MEVAQYINSD VRGVPLQMQP PRPLSGFTQR LKGKQGRFRG NLSGKRVEYT GRTVISPDPN LKITEVAIPI LMAQILTYPE RVSQHNIEKL
0401: RQCVRNGPNK YPGAKFIRHP DGNEMSLMFS SRKRYADELK FGYIVDRHLE DGDIVLFNRQ PSLHRMSIMS HRARIMPWRT LRFNESVCNP YNADFDGDEM
0501: NMHVPQTEEA RTEALMLMGV QNNLCTPKSG EILVASTQDF LTSSFLITRK DTFYNRASFS LICSYMGDAM DPTDLPSPAF IKPVELWTGK QLFHVLLRPY
0601: SKMRVYVNLT LTEKSYSGKG ETMCSSDGFV YFRNSELISG QLGKATLGNG NKDGLYSVLL RDYESHAAAT CMNRLAKLSA RWIGNHGFSI GIDDVTPGEN
0701: LVKQKQGEIH RNYKKCEDCI TQFNEGKLAV QPGCDAAQTL EAEVTMSLNK VRDDIGKICM KALDWRNSPL IMSQCGSKGS PINISQMIAC VGQQSVGGRR
0801: APDGFIDRSL PHFPFKSKFP AAKGFVAHSF FDGLSATEFF FHTMGGREGL VDTAVKTADT GYMSRRLMKA LEDLAVYYDS TVRNASACIV QFMYGDDGMD
0901: PSRMEEKKGR PLNFSRLFMK VKATCPPGGE KSLSYSEICE IVNERLSYHD MTPEGGCSEA FRASLSDFLI KSLAETLKNL RESLLLGEEQ YEGDDRGYLE
1001: KIVLNISGIT KKQLQVFLNT CISRYHLKRL EAGTAIGAIG AQSIGEPGTQ MTLKTFHFAG VASMNVTLGV PRIKEIINAA KKITTPIITA KLLSAGNLTA
1101: ARMIKARIEK TLLGQVAKSV KIVLASRLAS IAISLDMETI QVSQLCIDAY TVKQSILQTS KIKLKEHQIK VLNPRKLEVF PQANKDKLHF ELHRLKNKLP
1201: AVVVKGITTV QRAVVNKEQQ KDRKNDVKGE TYELLVEGTG LLAVMGIEGV DGRYTKSNHI MEVQHTLGIE AARVSIIDEI NYTMSSHGMT IDLRHMMLLA
1301: DLMTYKGEVL GITRHGVQKM KDSVLMLASF EKTTDHLFNA SVNGRDDKIE GVTECIIMGI PMTIGTGMFK LRQRVEHVEL NYQPDPMMIK
0101: NVGYLGTVVD ILKCICKCCS SILLDDKERR DILKKMRNPR TEFLKKSELH KRVVKRCNAM AGGQKTATCS KCGYMNGMVK KLQLKITHEQ GNRILDEINV
0201: AISDKRELRA SVSVPPEIDP KVVYSLFKNM SDEDCELLYL SDRPEKLLVT SIPVPPIAIR PSVFVDGGTQ SNENDITERL KRIIQANASL HQEMSDSSPV
0301: KSLNQWIDLQ MEVAQYINSD VRGVPLQMQP PRPLSGFTQR LKGKQGRFRG NLSGKRVEYT GRTVISPDPN LKITEVAIPI LMAQILTYPE RVSQHNIEKL
0401: RQCVRNGPNK YPGAKFIRHP DGNEMSLMFS SRKRYADELK FGYIVDRHLE DGDIVLFNRQ PSLHRMSIMS HRARIMPWRT LRFNESVCNP YNADFDGDEM
0501: NMHVPQTEEA RTEALMLMGV QNNLCTPKSG EILVASTQDF LTSSFLITRK DTFYNRASFS LICSYMGDAM DPTDLPSPAF IKPVELWTGK QLFHVLLRPY
0601: SKMRVYVNLT LTEKSYSGKG ETMCSSDGFV YFRNSELISG QLGKATLGNG NKDGLYSVLL RDYESHAAAT CMNRLAKLSA RWIGNHGFSI GIDDVTPGEN
0701: LVKQKQGEIH RNYKKCEDCI TQFNEGKLAV QPGCDAAQTL EAEVTMSLNK VRDDIGKICM KALDWRNSPL IMSQCGSKGS PINISQMIAC VGQQSVGGRR
0801: APDGFIDRSL PHFPFKSKFP AAKGFVAHSF FDGLSATEFF FHTMGGREGL VDTAVKTADT GYMSRRLMKA LEDLAVYYDS TVRNASACIV QFMYGDDGMD
0901: PSRMEEKKGR PLNFSRLFMK VKATCPPGGE KSLSYSEICE IVNERLSYHD MTPEGGCSEA FRASLSDFLI KSLAETLKNL RESLLLGEEQ YEGDDRGYLE
1001: KIVLNISGIT KKQLQVFLNT CISRYHLKRL EAGTAIGAIG AQSIGEPGTQ MTLKTFHFAG VASMNVTLGV PRIKEIINAA KKITTPIITA KLLSAGNLTA
1101: ARMIKARIEK TLLGQVAKSV KIVLASRLAS IAISLDMETI QVSQLCIDAY TVKQSILQTS KIKLKEHQIK VLNPRKLEVF PQANKDKLHF ELHRLKNKLP
1201: AVVVKGITTV QRAVVNKEQQ KDRKNDVKGE TYELLVEGTG LLAVMGIEGV DGRYTKSNHI MEVQHTLGIE AARVSIIDEI NYTMSSHGMT IDLRHMMLLA
1301: DLMTYKGEVL GITRHGVQKM KDSVLMLASF EKTTDHLFNA SVNGRDDKIE GVTECIIMGI PMTIGTGMFK LRQRVEHVEL NYQPDPMMIK
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.