Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 14.35 | 70.97 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 14.63 | 68.86 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 43.8 | 61.6 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 39.7 | 61.47 |
| Solyc11g072730.1.1 | Tomato | nucleus | 71.2 | 54.96 |
| KRG88695 | Soybean | nucleus | 67.66 | 52.19 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 7.08 | 51.35 |
| Os04t0492300-01 | Rice | nucleus | 64.59 | 50.11 |
| AT5G60040.2 | Thale cress | cytosol | 64.96 | 50.11 |
| Bra020267.1-P | Field mustard | nucleus | 63.75 | 49.93 |
| CDY09230 | Canola | nucleus | 63.75 | 49.93 |
| EES11045 | Sorghum | nucleus | 64.59 | 49.82 |
| Zm00001d003203_P003 | Maize | cytosol | 64.59 | 49.71 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 63.37 | 48.75 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 63.28 | 48.67 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 63.28 | 48.67 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 6.71 | 48.65 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 63.37 | 47.72 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 61.23 | 47.0 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 6.9 | 45.96 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 66.26 | 44.86 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 22.37 | 33.47 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 22.27 | 33.24 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 11.09 | 30.28 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 32.53 | 18.84 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 16.4 | 17.67 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 27.21 | 17.27 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 17.15 | 12.84 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 0.84 | 2.72 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 0.28 | 1.82 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | EntrezGene:100267354 |
| wikigene:100267354 | MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | ProteinID:CCB43623 |
| ProteinID:CCB43623.1 | ncoils:Coil | UniProt:F6GTV9 | EMBL:FN594951 | GO:GO:0001056 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | EntrezGene:LOC100267354 | wikigene:LOC100267354 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 |
| InterPro:RNAP_III_RPC1_N | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | TIGR:TC61623 | UniParc:UPI000210A2F1 |
| ArrayExpress:VIT_06s0004g03740 | EnsemblPlantsGene:VIT_06s0004g03740 | EnsemblPlants:VIT_06s0004g03740.t01 | unigene:Vvi.25367 | RefSeq:XP_002284657 | RefSeq:XP_002284657.1 |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6GTV9]
Coordinates
chr6:-:4692715..4737715
Molecular Weight (calculated)
119878.0 Da
IEP (calculated)
8.847
GRAVY (calculated)
-0.341
Length
1073 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDGIQFTKE PYIEDVGPRK IESIRFALFS ESEISKAAEV QVWRGVYYDA NRKPIENGLL DPRMGPANKN GTCATCLGNF RDCPGHCGYL TLALPVYNVG
0101: YLSTIVDILK CICKSCSRVL LDEKASKDYL KKMRSQKMEA LKKAELMKKI VQKCTAMASS KKAVKCSRCG YMNGIVKKAV SVLGIIHDRS KIADGSLEEC
0201: SSAISHTKES KASFSVVDIL NPVKVLSLFK RMMDEDCDLL NLAERPEKLV LTNIGVPPIA IRPSVFMDGG TQSNENDVTE RLKRIIQANA SLHQELQDTG
0301: STSKCLAGWD YLQIEVAQYI NSDVRGVPLA MQAARPLSGF VQRLKGKQGR FRGNLSGKRV EYTGRTVISP DPNLKITEVA IPILMAKILS YPERVSHHNI
0401: EKLRQCILNG PFKYPGAKLI RYPDGSMRSL MFSGRKRFAD ELKYGYIVER HLEDGDVVLF NRQPSLHRMS IMCHRARIMP WRTLRFNESV CNPYNADFDG
0501: DEMNMHVPQT EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLI TRKDTFYDRA AFSLMCSYMG DGMDLVDLPT PAIIKAMELW TGKQLFNVLL
0601: RPHANVRVYL NLTVMEKTYN KRRGKETMCP SDGFVYFRNS ELISGQLGKA TLGNGNKDGL FSVLLRDYNA HAAAACMNRL AKLSARWIGN HGFSIGIDDV
0701: QPGGLLNDQK SKRIEEGYEN CHELIQQYNK GKLKLQPGCN AAQTLEAEIT GVLNKIRETT ANVCMEELHW RNSPLIMSQC GSKGSPINIS QMIACVGQQS
0801: VGGRRAPDGF IDRTLPHFPR KSKTPDAKGF VASSFYTGLT ATEFFFHTMG GREGLVDTAV KTADTGYMSR RLMKALEDLS IQYDETVRNA NGSIVQFLYG
0901: DDGMDPARME GKDGFPLNFN RLFLKVKATC PAGENASLSA LQIEETVKRL KEHNTSAEGC SDAFKTNLSG FLEECKEKFK NTREALGLHG EHVGEENLDI
1001: QEKFAKNISG ITSKQLQKPE GSPVNQDGKS NSKMNLIQAI PPLLRVHPLC SKRQEIPLNI FISFFYFQLT HHI
0101: YLSTIVDILK CICKSCSRVL LDEKASKDYL KKMRSQKMEA LKKAELMKKI VQKCTAMASS KKAVKCSRCG YMNGIVKKAV SVLGIIHDRS KIADGSLEEC
0201: SSAISHTKES KASFSVVDIL NPVKVLSLFK RMMDEDCDLL NLAERPEKLV LTNIGVPPIA IRPSVFMDGG TQSNENDVTE RLKRIIQANA SLHQELQDTG
0301: STSKCLAGWD YLQIEVAQYI NSDVRGVPLA MQAARPLSGF VQRLKGKQGR FRGNLSGKRV EYTGRTVISP DPNLKITEVA IPILMAKILS YPERVSHHNI
0401: EKLRQCILNG PFKYPGAKLI RYPDGSMRSL MFSGRKRFAD ELKYGYIVER HLEDGDVVLF NRQPSLHRMS IMCHRARIMP WRTLRFNESV CNPYNADFDG
0501: DEMNMHVPQT EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLI TRKDTFYDRA AFSLMCSYMG DGMDLVDLPT PAIIKAMELW TGKQLFNVLL
0601: RPHANVRVYL NLTVMEKTYN KRRGKETMCP SDGFVYFRNS ELISGQLGKA TLGNGNKDGL FSVLLRDYNA HAAAACMNRL AKLSARWIGN HGFSIGIDDV
0701: QPGGLLNDQK SKRIEEGYEN CHELIQQYNK GKLKLQPGCN AAQTLEAEIT GVLNKIRETT ANVCMEELHW RNSPLIMSQC GSKGSPINIS QMIACVGQQS
0801: VGGRRAPDGF IDRTLPHFPR KSKTPDAKGF VASSFYTGLT ATEFFFHTMG GREGLVDTAV KTADTGYMSR RLMKALEDLS IQYDETVRNA NGSIVQFLYG
0901: DDGMDPARME GKDGFPLNFN RLFLKVKATC PAGENASLSA LQIEETVKRL KEHNTSAEGC SDAFKTNLSG FLEECKEKFK NTREALGLHG EHVGEENLDI
1001: QEKFAKNISG ITSKQLQKPE GSPVNQDGKS NSKMNLIQAI PPLLRVHPLC SKRQEIPLNI FISFFYFQLT HHI
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.