Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G114500.1 | Wheat | nucleus | 48.35 | 97.55 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 49.71 | 96.93 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 51.79 | 94.89 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 84.76 | 84.95 |
| Os04t0492300-01 | Rice | nucleus | 81.55 | 82.43 |
| EES11045 | Sorghum | nucleus | 78.4 | 78.79 |
| Zm00001d003203_P003 | Maize | cytosol | 78.04 | 78.26 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 71.96 | 63.47 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 14.59 | 61.63 |
| Solyc11g072730.1.1 | Tomato | nucleus | 61.23 | 61.58 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 47.0 | 61.23 |
| KRG88695 | Soybean | nucleus | 59.44 | 59.74 |
| CDY09230 | Canola | nucleus | 57.44 | 58.61 |
| Bra020267.1-P | Field mustard | nucleus | 57.44 | 58.61 |
| AT5G60040.2 | Thale cress | cytosol | 57.87 | 58.16 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 20.89 | 33.64 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 33.05 | 25.43 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 32.83 | 25.19 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 33.19 | 25.05 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 33.05 | 24.85 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 26.75 | 22.45 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 17.6 | 17.24 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 15.74 | 13.81 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 14.66 | 13.31 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 14.45 | 13.17 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 17.45 | 12.53 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF32 | InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| EnsemblPlantsGene:TraesCS1B01G134500 | EnsemblPlants:TraesCS1B01G134500.1 | TIGR:cd02583 | TIGR:cd02736 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:+:171030262..171045027
Molecular Weight (calculated)
156371.0 Da
IEP (calculated)
8.799
GRAVY (calculated)
-0.280
Length
1398 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAARWQQQG VEQKLRCTKE PYVDDDGTHR IKSMRFSTFS GGEVRKSAEA QVYNGWIYDE NRKPAPGGLL DTRMGAANKF GECTTCHCSY TECPGHFGYI
0101: KLALPVFNVG FFNSIVNVLK CICKRCSRIL LSEKDRQEFL KRMRNPRAEV LHKSAILSKV RDKCRPCRCH WCGYMNGVTK KGPKDRGGLA IVHDCSKTLD
0201: RTTEELRSAL SHKKEKLSFS SVHLLDPQTV LALFTRMTDE DCELLNLGDR PEKLIITEIA VPPVPIRPSV FVGGNKMSNE DSITCILKNI VAANHIIKEA
0301: LKKGESPVNC FNSWQDLQLQ VIEYINSDAP SLSDSQHRGL MQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLRITEVA IPVLMARVLT YPERVSYHNI
0401: EKLRQCIRNG PNKHPGANFI IQSDGTKLHL KYADRRIAAQ DLKYGCIVER HLEDGDIVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG
0501: DEMNLHVPQT EEARTEAFML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS YFTLLCSYLG DAMENIDLPT PALIKPIELW TGKQLFSVLV
0601: RPNACTKVFL NLTVEEKIYM KLKERDKKAI TVLEETMCPN DGFVYFQNSE LLCGQVGKKT LGNGNNEGMF SVLIRDYNSH AAASCMNRLA KFSARFIGNH
0701: GFSIGVDDVQ PGESLNQKKK ITIDEGYQKC HELIALYSKG DLIPQPGCNR AQTLESQISC VLNKLRETAG DDCMSTLHWR NSPLIMSQCG SKGSPINISQ
0801: MVVCVGQQSV GGRRAPNGFI DRTLPHFPIN SKTPAAKGFV ANSFYTGLTA TEFFFHTMGG REGLVDTAVK TAETGYMSRR LMKGLEDLSV FYDQTVRNAS
0901: GGIVQFVYGD DGLDPVKMEG KGGHPLNLDQ LFMKVMATCP QRGHDMLSPE LILQMFNDKL SGQDASSGGC SNKFKEMLTK FFEDRIKMLR STRRALQLDE
1001: DRVGKRDSSI EERVAADISG ISAKQLQVFL DTCLSRYHSK IIEAGASIGA IGAQSIGEPG TQMTLKTFHF AGVASMNVTL GVPRIKEIIN AVKKISTPII
1101: TTELLSEKDE LFAAKVKCSI EKVVLGEVAA SIKIVLKSNQ PYLVVELDMQ RTEGYMGISS DTVHLSILND PKIKLKSEHV RVIDEAKLRI YPTGTDKSKL
1201: QLELHNLKSM LPKLIVKGIP TVERAVVNPI LRRDGTFDRY NLLVEGTNLM KVLGTPGVDA KRTKSNHILE VNKTLGIEAA RRSIIDEIRY TFENNNMMID
1301: LRHMMLLADL MTYKGEILGI TAGGIAKMKS SVLMLSSFER ASEHLFNASY AGREDQIEGV SECIIMGIPM QLGTGILKVR QRLQDLPEFK YQPDPIIL
0101: KLALPVFNVG FFNSIVNVLK CICKRCSRIL LSEKDRQEFL KRMRNPRAEV LHKSAILSKV RDKCRPCRCH WCGYMNGVTK KGPKDRGGLA IVHDCSKTLD
0201: RTTEELRSAL SHKKEKLSFS SVHLLDPQTV LALFTRMTDE DCELLNLGDR PEKLIITEIA VPPVPIRPSV FVGGNKMSNE DSITCILKNI VAANHIIKEA
0301: LKKGESPVNC FNSWQDLQLQ VIEYINSDAP SLSDSQHRGL MQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLRITEVA IPVLMARVLT YPERVSYHNI
0401: EKLRQCIRNG PNKHPGANFI IQSDGTKLHL KYADRRIAAQ DLKYGCIVER HLEDGDIVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG
0501: DEMNLHVPQT EEARTEAFML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS YFTLLCSYLG DAMENIDLPT PALIKPIELW TGKQLFSVLV
0601: RPNACTKVFL NLTVEEKIYM KLKERDKKAI TVLEETMCPN DGFVYFQNSE LLCGQVGKKT LGNGNNEGMF SVLIRDYNSH AAASCMNRLA KFSARFIGNH
0701: GFSIGVDDVQ PGESLNQKKK ITIDEGYQKC HELIALYSKG DLIPQPGCNR AQTLESQISC VLNKLRETAG DDCMSTLHWR NSPLIMSQCG SKGSPINISQ
0801: MVVCVGQQSV GGRRAPNGFI DRTLPHFPIN SKTPAAKGFV ANSFYTGLTA TEFFFHTMGG REGLVDTAVK TAETGYMSRR LMKGLEDLSV FYDQTVRNAS
0901: GGIVQFVYGD DGLDPVKMEG KGGHPLNLDQ LFMKVMATCP QRGHDMLSPE LILQMFNDKL SGQDASSGGC SNKFKEMLTK FFEDRIKMLR STRRALQLDE
1001: DRVGKRDSSI EERVAADISG ISAKQLQVFL DTCLSRYHSK IIEAGASIGA IGAQSIGEPG TQMTLKTFHF AGVASMNVTL GVPRIKEIIN AVKKISTPII
1101: TTELLSEKDE LFAAKVKCSI EKVVLGEVAA SIKIVLKSNQ PYLVVELDMQ RTEGYMGISS DTVHLSILND PKIKLKSEHV RVIDEAKLRI YPTGTDKSKL
1201: QLELHNLKSM LPKLIVKGIP TVERAVVNPI LRRDGTFDRY NLLVEGTNLM KVLGTPGVDA KRTKSNHILE VNKTLGIEAA RRSIIDEIRY TFENNNMMID
1301: LRHMMLLADL MTYKGEILGI TAGGIAKMKS SVLMLSSFER ASEHLFNASY AGREDQIEGV SECIIMGIPM QLGTGILKVR QRLQDLPEFK YQPDPIIL
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.