Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G112670.15 | Barley | nucleus | 73.77 | 88.68 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 87.79 | 88.14 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 20.84 | 84.47 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 22.34 | 57.62 |
| KXG34194 | Sorghum | nucleus | 56.17 | 54.85 |
| Os02t0152800-01 | Rice | cytosol | 14.81 | 46.72 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 35.84 | 34.65 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 41.75 | 33.01 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 18.96 | 20.46 |
| Os02t0152600-01 | Rice | plasma membrane | 3.44 | 18.86 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 10.19 | 18.09 |
| Os02t0152700-01 | Rice | nucleus | 4.74 | 17.55 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 13.44 | 14.84 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 13.31 | 14.66 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 17.21 | 14.31 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 17.01 | 14.09 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 16.62 | 14.09 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 16.36 | 13.83 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 13.9 | 12.85 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | SMART:SM00663 |
| SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS5B01G420400 | EnsemblPlants:TraesCS5B01G420400.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:595676670..595685625
Molecular Weight (calculated)
170226.0 Da
IEP (calculated)
8.560
GRAVY (calculated)
-0.403
Length
1540 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEAETETEAG DDPALVAEGT VTCIRLAVAS NQEIVKAQPM KEEFPVTHPS QLAGNPALGL PLQLGHCDSC GATDLAKCEG HFGFIKLPVS VYHPSHIAEL
0101: TKILNMICFG CLQFKNCKID VTESLMMKKK PKSCCDLPPI HVAKVKKSNG ALTLELRVPS RKELEEGFWS FLDQFGFHTK GSSHCRRLFA EEVQKIMEKI
0201: SEKTRRQIAA KGYILQDGFV MSNLPVPPNC LRAYNVLHET LMCSPGPQDI TFKSLPATKQ WQQKMKALCI SKSSSFSCRG VITGDPYIPM NVVGVPDEVA
0301: RRMSVQERVT DYNIAQLQGM MDRGLCLTHE DANSITHSLD VGKANKKRTI LKVGETVNRR ILDGDAVFVN RPPSTDKHSV QAMYVRVHTG HTIKINPLIC
0401: GPLGADFDGD CVHIFFPRSV SARAEAIELF TVEKQLVSSH NAKLNFQLKN DCLLALKKMS ARKYSRREAN ELINAMFTAG LIPKKRLSGG PEWSFAQILE
0501: TVLPQENKIL IRDLVAGTIT ISSVLSTKNP REAIEFLNLL QPLLMESLFT DGFSVSLRDF NVQNPIAQTI QHETLDLDKL RKPIVDFITS SDMRFLVDQK
0601: RDSAMTKVVE QIGFLGHQLQ HDGRLYSGSL VEDCLSKSLS KCGSSTNGCH PLEAHGFVRN SLCNGLNPYE DLLHSISARE KTIRASKGLV EPGVLFKNMM
0701: AMLRDVVARY DGTIRNSCGN SVVKFDSTNS SNSVTPGDPV GILAATAVTN AAYKAVLDPN QNNMASWDSM KEVLLTRASS RNENDQKIIL YLNKCSCGDN
0801: FCMERASLTV QACLKRTKVE DCATELSIHY QQQNIQATHC LVGHIHLDKK QLDEMNISME GILQKCQKEI YRWGKKKGQV NQLMKRVVIS SVTTRMSESS
0901: ARVVQLMANT ISPILLDTVI KGVQEVNIVW VEPQDTCWVQ NSGTEQKGEL ALVVTMDKYS TGESGDVWGT AMDACIPVMD LIDTTRSLPY SIQQVQQGFG
1001: ISSAFGRVTQ HLSKAVGMVT KSVLEEHLTT VASSMTCTGN LHGFNSYGYK ATFKALKIQA PFMKATLARP LQCFEEGAEK VYSDQLDSVV STCSWGNPAP
1101: IGTGSAFKIH WNDGSTQAMR TLEGMVCMNS SEVETTRATE DNIIVPYGSC LYDVDNLEED EIEEDEVLRL GGNSPITWTD RPKANLLLHD LQGWRAEQGH
1201: QKVPVANWQH GKHVATESSG TSGWNQSSST MKVYQRRQRN SNWSSDATQQ DGKPSWNKAY VAGPSNFAIT GPSCGTSGWN QSSSTTKVYK RRQFDSNWSS
1301: DATQQDGNPS WKKANVAGQG NFAITGPSSS GGWSRKTNNL GRGRGGGRGA VWKSEGSHRG GNSRWKAQRA NTTSAPNFHI SGPSNFGGRN IKTGNLGPCR
1401: GRGPAWRSNG PNRGGSNGGP RGSSNFTLAE QQIHAQVDPI MKEVKRIIRE SRDGIKLSGD DERFIVENIL MYHPEKEKKM AGNNNYITVA KHQKFHSSRC
1501: LYVVSSDGPP TDFSYKKCLE NMIRIHYPRD ASSFCRKYFQ
0101: TKILNMICFG CLQFKNCKID VTESLMMKKK PKSCCDLPPI HVAKVKKSNG ALTLELRVPS RKELEEGFWS FLDQFGFHTK GSSHCRRLFA EEVQKIMEKI
0201: SEKTRRQIAA KGYILQDGFV MSNLPVPPNC LRAYNVLHET LMCSPGPQDI TFKSLPATKQ WQQKMKALCI SKSSSFSCRG VITGDPYIPM NVVGVPDEVA
0301: RRMSVQERVT DYNIAQLQGM MDRGLCLTHE DANSITHSLD VGKANKKRTI LKVGETVNRR ILDGDAVFVN RPPSTDKHSV QAMYVRVHTG HTIKINPLIC
0401: GPLGADFDGD CVHIFFPRSV SARAEAIELF TVEKQLVSSH NAKLNFQLKN DCLLALKKMS ARKYSRREAN ELINAMFTAG LIPKKRLSGG PEWSFAQILE
0501: TVLPQENKIL IRDLVAGTIT ISSVLSTKNP REAIEFLNLL QPLLMESLFT DGFSVSLRDF NVQNPIAQTI QHETLDLDKL RKPIVDFITS SDMRFLVDQK
0601: RDSAMTKVVE QIGFLGHQLQ HDGRLYSGSL VEDCLSKSLS KCGSSTNGCH PLEAHGFVRN SLCNGLNPYE DLLHSISARE KTIRASKGLV EPGVLFKNMM
0701: AMLRDVVARY DGTIRNSCGN SVVKFDSTNS SNSVTPGDPV GILAATAVTN AAYKAVLDPN QNNMASWDSM KEVLLTRASS RNENDQKIIL YLNKCSCGDN
0801: FCMERASLTV QACLKRTKVE DCATELSIHY QQQNIQATHC LVGHIHLDKK QLDEMNISME GILQKCQKEI YRWGKKKGQV NQLMKRVVIS SVTTRMSESS
0901: ARVVQLMANT ISPILLDTVI KGVQEVNIVW VEPQDTCWVQ NSGTEQKGEL ALVVTMDKYS TGESGDVWGT AMDACIPVMD LIDTTRSLPY SIQQVQQGFG
1001: ISSAFGRVTQ HLSKAVGMVT KSVLEEHLTT VASSMTCTGN LHGFNSYGYK ATFKALKIQA PFMKATLARP LQCFEEGAEK VYSDQLDSVV STCSWGNPAP
1101: IGTGSAFKIH WNDGSTQAMR TLEGMVCMNS SEVETTRATE DNIIVPYGSC LYDVDNLEED EIEEDEVLRL GGNSPITWTD RPKANLLLHD LQGWRAEQGH
1201: QKVPVANWQH GKHVATESSG TSGWNQSSST MKVYQRRQRN SNWSSDATQQ DGKPSWNKAY VAGPSNFAIT GPSCGTSGWN QSSSTTKVYK RRQFDSNWSS
1301: DATQQDGNPS WKKANVAGQG NFAITGPSSS GGWSRKTNNL GRGRGGGRGA VWKSEGSHRG GNSRWKAQRA NTTSAPNFHI SGPSNFGGRN IKTGNLGPCR
1401: GRGPAWRSNG PNRGGSNGGP RGSSNFTLAE QQIHAQVDPI MKEVKRIIRE SRDGIKLSGD DERFIVENIL MYHPEKEKKM AGNNNYITVA KHQKFHSSRC
1501: LYVVSSDGPP TDFSYKKCLE NMIRIHYPRD ASSFCRKYFQ
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.