Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G515800.1 | Wheat | nucleus | 95.44 | 95.96 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 94.12 | 94.74 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 86.43 | 80.99 |
| Zm00001d029055_P010 | Maize | nucleus | 64.11 | 63.2 |
| KXG22455 | Sorghum | nucleus | 64.35 | 61.89 |
| Os06t0612200-01 | Rice | nucleus | 8.52 | 59.92 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 50.3 | 55.94 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.32 | 50.53 |
| CDY65464 | Canola | nucleus | 27.13 | 48.24 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 47.9 | 47.19 |
| CDX67702 | Canola | nucleus | 41.9 | 46.26 |
| CDY06084 | Canola | nucleus | 42.2 | 46.22 |
| Solyc10g080350.1.1 | Tomato | nucleus | 46.4 | 46.09 |
| KRH33046 | Soybean | nucleus | 45.2 | 45.61 |
| CDX72007 | Canola | nucleus | 42.02 | 45.6 |
| Bra003294.1-P | Field mustard | nucleus | 43.22 | 45.57 |
| Bra007345.1-P | Field mustard | nucleus | 44.18 | 44.88 |
| KRH71957 | Soybean | nucleus | 34.57 | 44.72 |
| AT3G57660.1 | Thale cress | nucleus | 44.06 | 43.95 |
| CDY65462 | Canola | nucleus | 8.94 | 41.62 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 22.45 | 26.75 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 22.09 | 26.38 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 13.69 | 26.27 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 23.11 | 21.19 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 22.99 | 21.02 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 23.05 | 20.66 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 22.93 | 20.63 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 14.05 | 16.4 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 12.85 | 13.9 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 12.97 | 13.56 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 12.0 | 13.04 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 15.01 | 12.83 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | ncoils:Coil |
| InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS5B01G515600 | EnsemblPlants:TraesCS5B01G515600.1 | TIGR:cd01435 | TIGR:cd02735 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:679807523..679821143
Molecular Weight (calculated)
186542.0 Da
IEP (calculated)
7.022
GRAVY (calculated)
-0.523
Length
1666 amino acids
Sequence
(BLAST)
(BLAST)
0001: MCYFEKNQLF FHKAWRQATS VEVDSILFGF YTDDEVRRLS VKRLTRSERL DAKNCPVPGG LLDPAMGPVN ANDTCKTCAQ QPGDCPGHFG HIELSKPLFN
0101: PLLFDTLRDL LRSTCFTCRK FRLSAQLVDR YARELELLAR GHLVQAKNLQ DSAVEMDESA EMDDGDDDSV DKPSHRGNKT WTSIQLKEAH SIFSKLMKKR
0201: VNKCANCGMK NPPIKCQIYG WLTIQGTDGS AVRRKAIADY NLEGDGHISN PNGTGVSGLT DDRVKASSNQ TKDLSDDRPL LTTEVESILK DLWEKEARFC
0301: MLLCDFQQNL CVSEKRRGYE MFFLKSMLVP PNRFRPSTSS SLGIMEHPQN VMLSKVQEAN LALQHDNPNH MDILTRWRDL QTSVNLFYDS SKGLGKSGKD
0401: GHGVRQLVDK KTGIVRQKIM GKRVNHSCRT VISPDPFLAV NEIGIPPAAA LKLTYPEKVT PWNAKKLQGA ISNGSEIHPG ATRLKVNNHM YKLQDDRNKR
0501: RGIAKMLAAS KGSISQPGKD PKCEFESKVV YRHIQDGDIV LVNRQPTLHK PSMMAHVVRV LAGEKTIRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA
0601: INIVDANKQY IGPRSGEAVR GLIQDHIVGA VLLTKVDTFL SREEYSQLVY GSCVSSTRGP CQSGKRVSIV NDDDTLELLP PAFVKPERWT GKQVITTILN
0701: HLTKGHPPFT VEMKGKISVQ YLTAKVRHVA EGEKLRDPEE LVLYIRHNEL LKGMIDKNQF GNHGIVHTVH ELYGADAAGR LLSIFSRLFT LFLQFHGFTC
0801: GIDDLLLSQE SNNERTDFLS KSEEHSEEAH KKFLCEKDVD TDLVKLQMKV EKVVRRIGES ANVALDKAML SELNGLTTKV NKNMFPYGLQ KPFPKNCLTL
0901: MTATGAKGGD VNMTQISSLL GSQDLEGARV PRMISGKSLP CFPPWDSSSR AGGYVSDRFL TGLRPQEYYF HCMAGRNGLI DTAVKTSRSG YLQRCLIKSL
1001: ESLFVSYDHS VRNVDGSIIQ FCYGEDGVDV HKSSFLKKFK ELADNRKAVS DRLARYKGEL EIYNGDPLLF KSKYITKLPQ ELTESATDFH NKNKCCCRKL
1101: KKKCRCHYNI KEEELMKLLK VKYMASLVDP GEAVGVILAQ SLGEPSTQMT LNTFHLAGRG DMNVTLGMPR IQEILMKASA NIGTPYMKCP VHKGKKRKDA
1201: ARLAEKLRGV TLADVVEGIE VCTVPFHNSN GHISSLYKLH LKLFSPDCYP PESELTVDEC QASLRTVFVD AMEYAIEKHL NLLHKVSGIQ ETRVKDTESL
1301: PSEGPEESEG RPTDGDESDA SDGDDENEDD LGADAEKRKR QENDEMEYED DIENEDGMNS DPDEETKHEL DNEDDPAESG GESEENNEGH LSDSSNKTAK
1401: LEGRLAASKL KESNETVENL EEQKQAQITR KRSKKLKLTV HVESADLNFE VHYILHKEPH ILLSQIAQKT LRSLFVSGSH NKNIGLCNVI WPEKEKKGES
1501: ESKQKETERK DDFRGLQTAG LDFEVFWDLQ DLLDVRKLTS NDIHAMLRTY GVEAARATII NEVKAVFEPF GIKVDPRHLS LAADFMTSGG SYRPMNSLGM
1601: ARFCTSPFGK MSFEQATRFI MEAAYHGEVD NLTGPSATVS LGKPAKTGTG AFGLLQNIAL EERAVM
0101: PLLFDTLRDL LRSTCFTCRK FRLSAQLVDR YARELELLAR GHLVQAKNLQ DSAVEMDESA EMDDGDDDSV DKPSHRGNKT WTSIQLKEAH SIFSKLMKKR
0201: VNKCANCGMK NPPIKCQIYG WLTIQGTDGS AVRRKAIADY NLEGDGHISN PNGTGVSGLT DDRVKASSNQ TKDLSDDRPL LTTEVESILK DLWEKEARFC
0301: MLLCDFQQNL CVSEKRRGYE MFFLKSMLVP PNRFRPSTSS SLGIMEHPQN VMLSKVQEAN LALQHDNPNH MDILTRWRDL QTSVNLFYDS SKGLGKSGKD
0401: GHGVRQLVDK KTGIVRQKIM GKRVNHSCRT VISPDPFLAV NEIGIPPAAA LKLTYPEKVT PWNAKKLQGA ISNGSEIHPG ATRLKVNNHM YKLQDDRNKR
0501: RGIAKMLAAS KGSISQPGKD PKCEFESKVV YRHIQDGDIV LVNRQPTLHK PSMMAHVVRV LAGEKTIRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA
0601: INIVDANKQY IGPRSGEAVR GLIQDHIVGA VLLTKVDTFL SREEYSQLVY GSCVSSTRGP CQSGKRVSIV NDDDTLELLP PAFVKPERWT GKQVITTILN
0701: HLTKGHPPFT VEMKGKISVQ YLTAKVRHVA EGEKLRDPEE LVLYIRHNEL LKGMIDKNQF GNHGIVHTVH ELYGADAAGR LLSIFSRLFT LFLQFHGFTC
0801: GIDDLLLSQE SNNERTDFLS KSEEHSEEAH KKFLCEKDVD TDLVKLQMKV EKVVRRIGES ANVALDKAML SELNGLTTKV NKNMFPYGLQ KPFPKNCLTL
0901: MTATGAKGGD VNMTQISSLL GSQDLEGARV PRMISGKSLP CFPPWDSSSR AGGYVSDRFL TGLRPQEYYF HCMAGRNGLI DTAVKTSRSG YLQRCLIKSL
1001: ESLFVSYDHS VRNVDGSIIQ FCYGEDGVDV HKSSFLKKFK ELADNRKAVS DRLARYKGEL EIYNGDPLLF KSKYITKLPQ ELTESATDFH NKNKCCCRKL
1101: KKKCRCHYNI KEEELMKLLK VKYMASLVDP GEAVGVILAQ SLGEPSTQMT LNTFHLAGRG DMNVTLGMPR IQEILMKASA NIGTPYMKCP VHKGKKRKDA
1201: ARLAEKLRGV TLADVVEGIE VCTVPFHNSN GHISSLYKLH LKLFSPDCYP PESELTVDEC QASLRTVFVD AMEYAIEKHL NLLHKVSGIQ ETRVKDTESL
1301: PSEGPEESEG RPTDGDESDA SDGDDENEDD LGADAEKRKR QENDEMEYED DIENEDGMNS DPDEETKHEL DNEDDPAESG GESEENNEGH LSDSSNKTAK
1401: LEGRLAASKL KESNETVENL EEQKQAQITR KRSKKLKLTV HVESADLNFE VHYILHKEPH ILLSQIAQKT LRSLFVSGSH NKNIGLCNVI WPEKEKKGES
1501: ESKQKETERK DDFRGLQTAG LDFEVFWDLQ DLLDVRKLTS NDIHAMLRTY GVEAARATII NEVKAVFEPF GIKVDPRHLS LAADFMTSGG SYRPMNSLGM
1601: ARFCTSPFGK MSFEQATRFI MEAAYHGEVD NLTGPSATVS LGKPAKTGTG AFGLLQNIAL EERAVM
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.