Factsheet for Os06t0612200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0555200-01	Rice	cytosol	12.24	9.12
Zm00001d029055_P010	Maize	nucleus	63.71	8.93
GSMUA_Achr3P28430_001	Banana	nucleus	54.85	8.68
KXG22455	Sorghum	nucleus	62.87	8.6
TraesCS5B01G515600.1	Wheat	nucleus	59.92	8.52
GSMUA_Achr7P08010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	60.34	8.45
TraesCS5D01G515800.1	Wheat	nucleus	58.65	8.39
TraesCS4A01G357100.1	Wheat	nucleus	58.23	8.34
HORVU5Hr1G117770.4	Barley	nucleus, plastid	59.92	7.99
Os04t0572600-01	Rice	cytosol	14.77	7.76
CDY06084	Canola	nucleus	48.95	7.63
CDY65464	Canola	nucleus	29.96	7.58
CDX72007	Canola	nucleus	48.95	7.56
KRH71957	Soybean	nucleus	40.93	7.53
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	51.05	7.16
Bra007345.1-P	Field mustard	nucleus	49.37	7.13
Bra003294.1-P	Field mustard	nucleus	47.26	7.09
AT3G57660.1	Thale cress	nucleus	48.1	6.83
KRH33046	Soybean	nucleus	47.26	6.78
Solyc10g080350.1.1	Tomato	nucleus	47.68	6.74
CDX67702	Canola	nucleus	38.82	6.1
Os04t0492300-01	Rice	nucleus	20.25	3.47
Os02t0152600-01	Rice	plasma membrane	3.38	2.85
Os05t0151000-00	Rice	nucleus	21.1	2.71
Os01t0965000-00	Rice	nucleus	15.19	2.32
Os02t0152700-01	Rice	nucleus	0.42	0.24
Os02t0152800-01	Rice	cytosol	0.0	0.0
CDY65462	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.150.390	MapMan:35.1	ProteinID:BAF19977.2	ProteinID:BAS98602.1
InterPro:DNA-dir_RNA_pol1_lsu	GO:GO:0001054	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
EnsemblPlantsGene:Os06g0612200	EnsemblPlants:Os06t0612200-01	PFAM:PF04998	PANTHER:PTHR19376	PANTHER:PTHR19376:SF11	UniProt:Q0DAZ6
InterPro:RNA_pol_Rpb1_5	SUPFAM:SSF64484	UniParc:UPI0001B65C6A	:	:	:

Description

RNA polymerase Rpb1, domain 5 containing protein. (Os06t0612200-01)

Coordinates

chr6:+:24425808..24426989

Molecular Weight (calculated)

26278.5 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.174

Length

237 amino acids

Sequence
(BLAST)

001: MNEAEDEKAQ VTIKFKKNIK WTIHYESTGL NFEVHYALQE QPHILLAQIA QRTARSVFVK ACKNIDRCEV NKPKKIDNNT INTPITLQTA GVNFEVFHKL
101: VDYLDINEVR SNDIHAMLNT YGVEAARATI IGEVKGVFGA YGIHVDMRHL NLIADFMTFD GGYRPMSRLG MGQFSTSPFG KMTFETATKF IVEAASHGES
201: DTLDGPSASV CLGKPVKVGT GSFGLLQNFS LEQPVAM

Best Arabidopsis Sequence Match ( AT3G57660.2 )
(BLAST)

0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL

Arabidopsis Description

NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.