Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
extracellular: 21255809 |
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os06t0215200-01 | |
| Os06t0670400-00 | |
| Os06t0670500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | Os06t0215200-01 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | Os06t0670400-00 | AT1G53720.1 | 16497658 |
| AT4G35800.1 | Os06t0670500-01 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.69 | 87.27 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.67 | 81.44 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.27 | 81.21 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 60.59 | 79.26 |
| KRH28855 | Soybean | nucleus | 78.56 | 79.2 |
| KRH76591 | Soybean | nucleus | 78.34 | 78.98 |
| PGSC0003DMT400009249 | Potato | nucleus | 78.34 | 78.47 |
| KRH40807 | Soybean | nucleus | 75.41 | 78.39 |
| Solyc02g083350.2.1 | Tomato | nucleus | 78.56 | 78.39 |
| Bra010510.1-P | Field mustard | nucleus | 76.44 | 77.19 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 46.96 | 77.09 |
| AT4G35800.1 | Thale cress | nucleus | 76.93 | 77.05 |
| CDY71816 | Canola | cytosol | 11.89 | 76.84 |
| EES08565 | Sorghum | nucleus | 77.69 | 76.2 |
| CDY08876 | Canola | nucleus | 64.93 | 73.87 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.53 | 72.77 |
| CDX69166 | Canola | cytosol | 72.26 | 50.42 |
| Bra011638.1-P | Field mustard | nucleus | 74.0 | 50.31 |
| CDX75527 | Canola | nucleus | 74.16 | 50.29 |
| Os04t0492300-01 | Rice | nucleus | 25.57 | 34.06 |
| Os02t0152800-01 | Rice | cytosol | 6.62 | 25.0 |
| Os02t0152600-01 | Rice | plasma membrane | 3.8 | 24.91 |
| Os06t0612200-01 | Rice | nucleus | 2.71 | 21.1 |
| Os01t0965000-00 | Rice | nucleus | 14.82 | 17.62 |
| Os09t0555200-01 | Rice | cytosol | 1.74 | 10.06 |
| Os04t0572600-01 | Rice | cytosol | 2.44 | 9.98 |
| Os02t0152700-01 | Rice | nucleus | 0.76 | 3.37 |
Protein Annotations
Description
Similar to DNA-directed RNA polymerase. (Os05t0151000-00)
Coordinates
chr5:-:2936549..2944391
Molecular Weight (calculated)
206681.0 Da
IEP (calculated)
7.009
GRAVY (calculated)
-0.383
Length
1842 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDAARFPYSP AEVAKVEAVQ FGVLSPDEIR QMSVVHIEHA ETMEKGKPKP GGLSDPRMGT IDRKIKCETC MAGMAECPGH FGHLELAKPM FHIGFIKTVL
0101: SIMRCVCFNC SKILADEDDI KFKQALKIRN PKNKLKRIYD ACKNRKICAG GDNLDVQEQQ GTDDPVKKRG GCGAQQPNIT VDGMKMVAEY KAPKKKNDDQ
0201: EQLPEPVDRK QILSAERVLN VLKHISDEDC LLLGLNPKFA RPDWMILQVL PIPPPPVRPS VMMDTSSRSE DDLTHQLAMI IRHNENLRRQ ERNGAPAHII
0301: TEFAQLLQFH IATYFDNELP GQPRATQRSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPNI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVEYGPHPP PGKTGAKYII REDGQRLDLR YVKKSSDQHL ELGYKVERHL NDGDFVLFNR QPSLHKMSIM GHRIKIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQS NRPVMGIVQD TLLGCRKITK RDTLIEKDVF MNILMWWEDF DGKVPAPAIL KPRPIWTGKQ VFNLIIPKQI
0601: NLIRFSGWHS EAETRFITPG DTMVRIEKGE LLSGTLCKKT LGTSTGSLIH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FSIGIGDTIA DAATMENINE
0701: TISKAKNDVK KLIKQFRDNQ LEAEAGRTTM ESFENRVNEV LNKARDVAGS SAEKSLSESN NLKAMATAGS KGTFINISQM TACVGQQNVE GKRIPFGFTN
0801: RTLPHFTKND YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAIWIESQ
0901: KLDSLKMKKA EFDNVFRYEL DDENWKPNYL STQHAEDLKT ISEIRNVFEA EVQKLEADRF QLGTEIATTG DNTWPMPVNL KRLIWNAQKT FKIDLRRPSD
1001: MHPMEIVDAI DKLQERLKVV PGDDDISIEA QKNATLFFNI LLRSTFASKR VLKEYRLTKE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKN IKTPSLSVHL KPEVNKKKEL AKNVQCALEY TTLRSVTHAT EIWYDPDPLG TIIEEDAEFV QSYYEMPDED
1201: IDPDKISPWL LRIELNREMM VDKKLSMADI AEKINHEFDD DLSCIFNDDN ADKLILRVRI TNDEAQKGEI QDEYGEDDVF LKKIESNMLT EMALRGIPGI
1301: NKVFIKEGNV NKFEDNDGFK TEKGWMLDTE GVNLLAVMCH EDVDATRTTS NHLIEVIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA VLCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAVYAESD PLRGVSENIM LGQLAPIGTG GCDLYLNDQM LKQAIELQLP SYVEGLDFGM MTSACSPISG
1501: TPYHQGMMSP SYLLSPDIRA SPTAADAQFS PYVGGMAFSP VSSPGNYTPS SGGGYSPSPP VCTPGPGSFT SSSPYNPVSP FYSPASPLSC PLTSPSYVPT
1601: SLPHSPTSPI YSATSPIYSP SSPIYSPTSL SYSPTSPVYS PTSPVYNPTS SAYSPTSPSY NPTSPSYTPH HHLIAPHRRL TITAPHHRHI AQHRRLTAPH
1701: HHHTAQHRRL TVRRHPHIVR HRLHTALLRL HTAQHLLATA QHLQATAHLR QATILLRSST RLHMHTLQAA QITTGTELFS TSPTYSPTSP SYSQPSPSYS
1801: PTRSDFIICF ASSDYQKRVY FSTTSNCAHA MPFFAAMIIR IA
0101: SIMRCVCFNC SKILADEDDI KFKQALKIRN PKNKLKRIYD ACKNRKICAG GDNLDVQEQQ GTDDPVKKRG GCGAQQPNIT VDGMKMVAEY KAPKKKNDDQ
0201: EQLPEPVDRK QILSAERVLN VLKHISDEDC LLLGLNPKFA RPDWMILQVL PIPPPPVRPS VMMDTSSRSE DDLTHQLAMI IRHNENLRRQ ERNGAPAHII
0301: TEFAQLLQFH IATYFDNELP GQPRATQRSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPNI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVEYGPHPP PGKTGAKYII REDGQRLDLR YVKKSSDQHL ELGYKVERHL NDGDFVLFNR QPSLHKMSIM GHRIKIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQS NRPVMGIVQD TLLGCRKITK RDTLIEKDVF MNILMWWEDF DGKVPAPAIL KPRPIWTGKQ VFNLIIPKQI
0601: NLIRFSGWHS EAETRFITPG DTMVRIEKGE LLSGTLCKKT LGTSTGSLIH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FSIGIGDTIA DAATMENINE
0701: TISKAKNDVK KLIKQFRDNQ LEAEAGRTTM ESFENRVNEV LNKARDVAGS SAEKSLSESN NLKAMATAGS KGTFINISQM TACVGQQNVE GKRIPFGFTN
0801: RTLPHFTKND YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAIWIESQ
0901: KLDSLKMKKA EFDNVFRYEL DDENWKPNYL STQHAEDLKT ISEIRNVFEA EVQKLEADRF QLGTEIATTG DNTWPMPVNL KRLIWNAQKT FKIDLRRPSD
1001: MHPMEIVDAI DKLQERLKVV PGDDDISIEA QKNATLFFNI LLRSTFASKR VLKEYRLTKE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKN IKTPSLSVHL KPEVNKKKEL AKNVQCALEY TTLRSVTHAT EIWYDPDPLG TIIEEDAEFV QSYYEMPDED
1201: IDPDKISPWL LRIELNREMM VDKKLSMADI AEKINHEFDD DLSCIFNDDN ADKLILRVRI TNDEAQKGEI QDEYGEDDVF LKKIESNMLT EMALRGIPGI
1301: NKVFIKEGNV NKFEDNDGFK TEKGWMLDTE GVNLLAVMCH EDVDATRTTS NHLIEVIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA VLCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAVYAESD PLRGVSENIM LGQLAPIGTG GCDLYLNDQM LKQAIELQLP SYVEGLDFGM MTSACSPISG
1501: TPYHQGMMSP SYLLSPDIRA SPTAADAQFS PYVGGMAFSP VSSPGNYTPS SGGGYSPSPP VCTPGPGSFT SSSPYNPVSP FYSPASPLSC PLTSPSYVPT
1601: SLPHSPTSPI YSATSPIYSP SSPIYSPTSL SYSPTSPVYS PTSPVYNPTS SAYSPTSPSY NPTSPSYTPH HHLIAPHRRL TITAPHHRHI AQHRRLTAPH
1701: HHHTAQHRRL TVRRHPHIVR HRLHTALLRL HTAQHLLATA QHLQATAHLR QATILLRSST RLHMHTLQAA QITTGTELFS TSPTYSPTSP SYSQPSPSYS
1801: PTRSDFIICF ASSDYQKRVY FSTTSNCAHA MPFFAAMIIR IA
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.