Factsheet for Os04t0572600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
PTS1:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0555200-01	Rice	cytosol	62.97	89.31
HORVU0Hr1G000370.1	Barley	extracellular	26.61	81.08
Zm00001d031459_P001	Maize	cytosol	46.78	63.55
Bra041010.1-P	Field mustard	cytosol, plastid	32.15	30.33
CDY68589	Canola	cytosol	32.15	27.2
TraesCS1A01G106300.1	Wheat	nucleus	66.08	20.91
TraesCS1D01G108700.1	Wheat	nucleus	65.63	20.77
TraesCS1B01G123600.1	Wheat	nucleus	65.41	20.67
OQU82183	Sorghum	endoplasmic reticulum, plasma membrane	67.41	20.49
HORVU1Hr1G023350.20	Barley	cytosol, nucleus, plastid	66.3	19.96
Os06t0612200-01	Rice	nucleus	7.76	14.77
Solyc08g080210.2.1	Tomato	nucleus	34.81	13.02
GSMUA_Achr8P12010_001	Banana	golgi	44.57	12.01
VIT_02s0025g04530.t01	Wine grape	nucleus	36.36	11.44
KRH27976	Soybean	nucleus	32.82	10.18
CDY32191	Canola	nucleus	32.37	10.11
CDX93859	Canola	nucleus	32.37	10.09
Bra027611.1-P	Field mustard	nucleus	32.15	10.05
AT1G63020.2	Thale cress	cytosol, nucleus, plasma membrane	32.37	10.05
CDY49206	Canola	nucleus	32.15	9.93
KRH77477	Soybean	nucleus	31.04	9.61
Os02t0152700-01	Rice	nucleus	7.76	8.41
Os01t0965000-00	Rice	nucleus	19.07	5.55
Zm00001d031457_P009	Maize	nucleus	12.2	5.06
Os04t0492300-01	Rice	nucleus	8.87	2.89
Os05t0151000-00	Rice	nucleus	9.98	2.44
Os02t0152600-01	Rice	plasma membrane	1.11	1.78
Os02t0152800-01	Rice	cytosol	0.0	0.0
CDY50743	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.10.450.40	MapMan:35.1	UniProt:A0A0P0WDW6	ProteinID:BAS90582.1	GO:GO:0001056	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0006139
GO:GO:0006351	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0046872	EnsemblPlantsGene:Os04g0572600	EnsemblPlants:Os04t0572600-01	PFAM:PF11523
PANTHER:PTHR19376	PANTHER:PTHR19376:SF40	SUPFAM:SSF64484	UniParc:UPI000393BD26	SEG:seg	:

Description

Similar to DNA-directed RNA polymerase. (Os04t0572600-01)

Coordinates

chr4:+:28841171..28846886

Molecular Weight (calculated)

50830.8 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.363

Length

451 amino acids

Sequence
(BLAST)

001: ETMKIKRLGL EFIVREIIDQ YNTLRKQLNN AIPSVSISNS KCSVGNECVK NQTCCVTMVV QVEINSMSQL DVIKERVIPS ILATLLKGFL EFKNVKVQCQ
101: EDNELVLKVG MSEHCKSGKF WATLQNACIP IMELIDWERS RPERVYDNFC SYGIDSAWKF FVESLRSTTD AIGRNIHRQH LLVVADCLSV SGQFHGLSSQ
201: GLKQQRTWLS ISSPFSEACF SRPAHSFINA AKRDSVDNLS GTLDAIAWGK EPCAGSSGPF KILYSGKSHE TKQNEHIYDF LHNPEVQALE KNVMDTYRKR
301: TEKTSKRRSA LNSEGNATIN GGAISFNQKF LNAKVGIWEN IIDMRTSLQN MLREYTLNEV VTEQDKSCLM EALKFHPRGY DKIGVGIREI KIGVNPGHPS
401: SRCFIVLRND DTTADFSYNK CVLGAANSIS PELGSYIENR RSNRAVRPHQ L

Best Arabidopsis Sequence Match ( AT1G63020.5 )
(BLAST)

0001: MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPESIAKRLQ VSEHLNQCNK ERLVTSFVPT LLDNKEMHVR RGDRLVAIQV NDLQTGDKIF RSLMDGDTVL
0101: MNRPPSIHQH SLIAMTVRIL PTTSVVSLNP ICCLPFRGDF DGDCLHGYVP QSIQAKVELD ELVALDKQLI NRQNGRNLLS LGQDSLTAAY LVNVEKNCYL
0201: NRAQMQQLQM YCPFQLPPPA IIKASPSSTE PQWTGMQLFG MLFPPGFDYT YPLNNVVVSN GELLSFSEGS AWLRDGEGNF IERLLKHDKG KVLDIIYSAQ
0301: EMLSQWLLMR GLSVSLADLY LSSDLQSRKN LTEEISYGLR EAEQVCNKQQ LMVESWRDFL AVNGEDKEED SVSDLARFCY ERQKSATLSE LAVSAFKDAY
0401: RDVQALAYRY GDQSNSFLIM SKAGSKGNIG KLVQHSMCIG LQNSAVSLSF GFPRELTCAA WNDPNSPLRG AKGKDSTTTE SYVPYGVIEN SFLTGLNPLE
0501: SFVHSVTSRD SSFSGNADLP GTLSRRLMFF MRDIYAAYDG TVRNSFGNQL VQFTYETDGP VEDITGEALG SLSACALSEA AYSALDQPIS LLETSPLLNL
0601: KNVLECGSKK GQREQTMSLY LSEYLSKKKH GFEYGSLEIK NHLEKLSFSE IVSTSMIIFS PSSNTKVPLS PWVCHFHISE KVLKRKQLSA ESVVSSLNEQ
0701: YKSRNRELKL DIVDLDIQNT NHCSSDDQAM KDDNVCITVT VVEASKHSVL ELDAIRLVLI PFLLDSPVKG DQGIKKVNIL WTDRPKAPKR NGNHLAGELY
0801: LKVTMYGDRG KRNCWTALLE TCLPIMDMID WGRSHPDNIR QCCSVYGIDA GRSIFVANLE SAVSDTGKEI LREHLLLVAD SLSVTGEFVA LNAKGWSKQR
0901: QVESTPAPFT QACFSSPSQC FLKAAKEGVR DDLQGSIDAL AWGKVPGFGT GDQFEIIISP KVHGFTTPVD VYDLLSSTKT MRRTNSAPKS DKATVQPFGL
1001: LHSAFLKDIK VLDGKGIPMS LLRTIFTWKN IELLSQSLKR ILHSYEINEL LNERDEGLVK MVLQLHPNSV EKIGPGVKGI RVAKSKHGDS CCFEVVRIDG
1101: TFEDFSYHKC VLGATKIIAP KKMNFYKSKY LKNGTLESGG FSENP

Arabidopsis Description

NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.